BAC Information

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BAC

Clone NameMSMg01-132G11
Chromosome6 (Build37)
Map Location 41,631,080 - 41,631,698
singlet/doubletsinglet
Overlap genenone
Upstream geneMgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5
Downstream gene1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132G11.T7 (MSMg01no132_g11.b1)MSMg01-132G11.TJ (MSMg01no132_g11.g1)
ACCAG339657AG339658
length734722
length of high quality
(start - end)		34 (73 - 106)617 (74 - 690)
definitionCHROMAT_FILE: MSMg01no132_g11.b1 PHD_FILE: MSMg01no132_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:54 2005CHROMAT_FILE: MSMg01no132_g11.g1 PHD_FILE: MSMg01no132_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:46:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCXXXXXXXXXXXXXXXXXXXXXXXXXXCTANATCCTAGGATCCGCGGA
ATTCCAGGGCATTGCGGAGGGTGTGGGTAGGTGGATGAGTGGGGGAACAC
CCTCATACAAGCAGACGGAGAGCACAAAGTGGCTTTCTGGGGATAAACTG
GCAAAGGAGATAACATTTGAAATGTAAATAAAGACAATATCCACTACAAA
ATTCTGCTTTCGGGAAGAAAAAGCTATAGTAGATAGTATAATAGTTATTT
GAATAATTATTATATGGTCAATTTACACATTATTACGCTATTATTAGCAT
AGATTCAAACTATATCTTACTCACCTTTCTTTCACTGCGGCTTCCGAATT
TTGGAAAATATGTAATTATCACTCTGCCCCCGCTGCCTATGGATATCTCT
AATTATTCTTAAGGAAGTTCCCCCCACATTATTTCTAAAATCTTTAATGT
ATCTATGAAAAACTATGCCACATGAATTCACGCCAAGTTCTAACTTCTTT
CTCTCTGCGCGCGTGAGTGTCTGTGTTTACGTGTCCCACTTCTCCTCCTA
CTACCTCAACTATCTTCCGCCCCTTACCCCTCCTTACTTCTTTGCTCTCT
ACCATACCCACCCACTTCATACCTTTTTTCCCCATCTCACCTCTTCTTTC
CTACTTTCTATCTCACGCTCTTTTCTATACTACCTGTCTCTCCCTCTAAT
ACTTCTGCCGGATTCTCCCCTCTTTTTCCTCTCT

ATGAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTGTGTAACTCCTGATGTTAGACAGCAG
AAATTGAGAATGATCAAAGGACAGAGAAACCTTTCTACACTGAGACACTT
TCGACGCGGCAGGAGGAATGGGTTCTGGTAAAGGCAAATGTTCCTTTATC
AAATACTATCTTGCATTGTCTTTATGGCTTTCAGTGAGACATATTACTGT
TGTTGAATGTATTCCTTCAACGGGCCTGTGAGATTAGTGGAAATAAAGCA
AGGGCAGCTTTTGAATGAGAATATATCACACTGAGAGGAAGTGAGCTCTC
TCATCTCCTGGGCTGGAGACAGCATTGAAGCAGGCTTTCAATTCATAGGC
TTGTGACCTTAGTTTCCAATTCATACTTCTCCCGGTCTTTGTACTTCTTA
GGAATCTTTGAGTCAGACAGACTTGGGTGGGATATGCTTGAGACGCTCTC
CTGGAGAGCCTTAGGACCTCCCCTTCCTTTTGAGGTAAATGAGAGTTCTG
ATCAGAGAACAAAATATTTATAGCAGAGCAAGAATGGAAACAAAAGGAGA
TATAGAAAGGAAGAAGAGCTACAGGAGACAAGGAGAAACAATGTTCTTAC
CCCAGGAGTGGGAGGGTCACCTTGTAGAGCATTTTTATGCCTCACTGGGG
GTTGGGGCGGTGTGGGTGCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_g11.g1 MSMg01no132_g11.g1 CHROMAT_FILE:
MSMg01no132_g11.g1 PHD_FILE: MSMg01no132_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:46:55 2005
         (617 letters)



>mm_chr6_41630880_41631898
          Length = 1019

 Score = 1147 bits (593), Expect = 0.0
 Identities = 612/619 (98%), Gaps = 2/619 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgtaactcctgatgttagacagcagaaattgagaatgatcaaaggacagagaaacctt 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 tgtgtaactcctgatgttagacagcagaaattgagagtgatcaaaggacagagaaacctt 260

                                                                       
Query: 61  tctacactgagacactttcgacgcggcaggaggaatgggttctggtaaaggcaaatgttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctacactgagacactttcgacgcggcaggaggaatgggttctggtaaaggcaaatgttc 320

                                                                       
Query: 121 ctttatcaaatactatcttgcattgtctttatggctttcagtgagacatattactgttgt 180
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 321 ctttatcaaatactatcttgcattgtctttatggctttcagtgagacacattactgttgt 380

                                                                       
Query: 181 tgaatgtattccttcaacgggcctgtgagattagtggaaataaagcaagggcagcttttg 240
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 381 tgaatgtattccttcaacgggcctgtgagattagtggaaataaaacaagggcagcttttg 440

                                                                       
Query: 241 aatgagaatatatcacactgagaggaagtgagctctctcatctcctgggctggagacagc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aatgagaatatatcacactgagaggaagtgagctctctcatctcctgggctggagacagc 500

                                                                       
Query: 301 attgaagcaggctttcaattcataggcttgtgaccttagtttccaattcatacttctccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgaagcaggctttcaattcataggcttgtgaccttagtttccaattcatacttctccc 560

                                                                       
Query: 361 ggtctttgtacttcttaggaatctttgagtcagacagacttgggtgggatatgcttgaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggtctttgtacttcttaggaatctttgagtcagacagacttgggtgggatatgcttgaga 620

                                                                       
Query: 421 cgctctcctggagagccttaggacctccccttccttttgaggtaaatgagag--ttctga 478
           |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||
Sbjct: 621 cgctctcctggagagcctcaggacctccccttccttttgaggtaaatgagagagttctga 680

                                                                       
Query: 479 tcagagaacaaaatatttatagcagagcaagaatggaaacaaaaggagatatagaaagga 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tcagagaacaaaatatttatagcagagcaagaatggaaacaaaaggagatatagaaagga 740

                                                                       
Query: 539 agaagagctacaggagacaaggagaaacaatgttcttaccccaggagtgggagggtcacc 598
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agaagagctacatgagacaaggagaaacaatgttcttaccccaggagtgggagggtcacc 800

                              
Query: 599 ttgtagagcatttttatgc 617
           |||||||||||||||||||
Sbjct: 801 ttgtagagcatttttatgc 819


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1019
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1009
Effective search space:   612463
Effective search space used:   612463
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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