BAC Information

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BAC

Clone NameMSMg01-132H23
Chromosome6 (Build37)
Map Location 33,338,655 - 33,493,638
singlet/doubletdoublet
Overlap geneExoc4
Upstream genePlxna4, Chchd3, LOC100039118, Gm1401
Downstream geneLrguk, Slc35b4, Akr1b3, Akr1b8, LOC664942, 2310005E10Rik, Akr1b7, Bpgm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132H23.T7 (MSMg01no132_h23.b1)MSMg01-132H23.TJ (MSMg01no132_h23.g1)
ACCAG339726AG339727
length700696
length of high quality
(start - end)
658 (43 - 700)307 (378 - 684)
definitionCHROMAT_FILE: MSMg01no132_h23.b1 PHD_FILE: MSMg01no132_h23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:01 2005CHROMAT_FILE: MSMg01no132_h23.g1 PHD_FILE: MSMg01no132_h23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,492,984 - 33,493,638)(33,338,655 - 33,338,960)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAGAGCGCGGAATT
CTACCAGACTTCCCAAGAAGAGCTAATATCAATACTCTTCAAATTATTCC
ACAAAACAGAAACAGAAGGAATATTGCAAAACTCATTTTATGAGGCCACA
GCCAGCTGATAACGATACCACACAAGAATTCAACAAAGAGAGAGAATTAC
AGACCAATTTCCCCCATACTAGGCTGCCTTGTCCAGCCTCAATCTAATGT
TTCACGTCAGAAAATAGCCATTTCTCTCCAAGTGCTTCTCATAAAATCAT
TATACATTTTATTTTTACAATAGAAAATAAAATACCCAAATACCATTTTC
TATTGCAGCTAAAGGAGAAAAAAAATCCAAAGTAGGCCAAGGATCCAACA
AATGGATTATTTAAACTGTATGGGATAAGAAAGAACAGAGATAGACAGAA
AACAAACAGAAGAAAACAATAGCACTGGGAGGCTTGTGAGGAGAACTGTG
TGGCAATCACACTGGAGCAAAGCGAGGAGGTGGAGGCAGCAGGCAACACC
AATGGAACTACATCTGGCATTCAGGGCAAAGACAAACGACCATAACCAAA
AGAGACCACGGGCCAGTCAGTCAGAATCCATGACTAGAACGACAAACTGG
TCCCTGTAACCTCTGAAATCATGCGTCTGTTTTTCTTAAAGCTGTTTTTC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXTCTCAGGAATTATACTCTTAAGGAAGGAACCACTAAGGAACA
CAGAGCCACTAAGGAATGACTTGATGGACTCATTACTAGTTTCTTTAATT
GATTTGAACAGTTCTCAAGTAGATAAATAGTTTTTAATAGCTTCCATAGA
GGAAAAACCTGGCTAAAATTCCCAAGTAATATAGATAGATCCCTTCCTAG
TTTAAAGAGCTGACTAATAACTAGACCATCTAATGTTGGGGTCTACTCTT
TTAAGAGAGGGATGGGGTTTCTAGTCAGTGGAAGTACTCAAAGAAGAGGT
TACAATGTGTTTTCCCACGCCCCCCAATGCCTTTTTTTAATGTTCAAGGT
GTTCCAAAGTTTATAATCAGAGCATTGATGGAGAAAGACCATCTAGTTTG
TAATGAGAGTGGAGTAATTATAGTGACTAGATGAGCCTATGTAGTTTACA
CATAATTTGTAACCAGAAAAGAGCTGAGCATTTTAGAGAATTAGGGGATG
ATTTACCCCAGACTCTGTGCTGTCTCCATCTTTTCGCACATAGGCTAACA
CTCAGGTCTTGTCTGTACTATCTCTCATGTATTGGCCTGATTCTCAGCCA
GCCCACCTCCTCAGTATCACTAGGTGTCATGTATTTTTACTCACAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_h23.b1 MSMg01no132_h23.b1 CHROMAT_FILE:
MSMg01no132_h23.b1 PHD_FILE: MSMg01no132_h23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:01 2005
         (658 letters)



>mm_chr6_33492609_33493666
          Length = 1058

 Score = 1243 bits (643), Expect = 0.0
 Identities = 652/655 (99%)
 Strand = Plus / Minus

                                                                        
Query: 4    gaattctaccagacttcccaagaagagctaatatcaatactcttcaaattattccacaaa 63
            |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 gaattctaccagactttcaaagaagagctaatatcaatactcttcaaattattccacaaa 971

                                                                        
Query: 64   acagaaacagaaggaatattgcaaaactcattttatgaggccacagccagctgataacga 123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 970  acagaaacagaaggaatattgcaaaactcattttatgaggccacagccagctgataacga 911

                                                                        
Query: 124  taccacacaagaattcaacaaagagagagaattacagaccaatttcccccatactaggct 183
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910  taccacacaagaattcaacaaagagagagaattacagaccaatttcccccatactaggct 851

                                                                        
Query: 184  gccttgtccagcctcaatctaatgtttcacgtcagaaaatagccatttctctccaagtgc 243
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850  gccttgtccagcctcaatctaatgtttcacgtcagaaaatagccatttctctccaagtgc 791

                                                                        
Query: 244  ttctcataaaatcattatacattttatttttacaatagaaaataaaatacccaaatacca 303
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 790  ttctcataaaatcattatacattttatttttacaatagaaaataaaatacccaaatacca 731

                                                                        
Query: 304  ttttctattgcagctaaaggagaaaaaaaatccaaagtaggccaaggatccaacaaatgg 363
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 730  ttttctattgcagctaaaggagaaaaaaaatccaaagtaggccaaggatccaacaaatgg 671

                                                                        
Query: 364  attatttaaactgtatgggataagaaagaacagagatagacagaaaacaaacagaagaaa 423
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670  attatttaaactgtatgggataagaaagaacagagatagacagaaaacaaacagaagaaa 611

                                                                        
Query: 424  acaatagcactgggaggcttgtgaggagaactgtgtggcaatcacactggagcaaagcga 483
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610  acaatagcactgggaggcttgtgaggagaactgtgtggcaatcacactggagcaaagcga 551

                                                                        
Query: 484  ggaggtggaggcagcaggcaacaccaatggaactacatctggcattcagggcaaagacaa 543
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550  ggaggtggaggcagcaggcaacaccaatggaactacatctggcattcagggcaaagacaa 491

                                                                        
Query: 544  acgaccataaccaaaagagaccacgggccagtcagtcagaatccatgactagaacgacaa 603
            |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 490  acgaccataaccaaaagagaccacgggccagtcagtcagaatccatgactagaaggacaa 431

                                                                   
Query: 604  actggtccctgtaacctctgaaatcatgcgtctgtttttcttaaagctgtttttc 658
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430  actggtccctgtaacctctgaaatcatgcgtctgtttttcttaaagctgtttttc 376


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 658
Length of database: 1058
Length adjustment: 10
Effective length of query: 648
Effective length of database: 1048
Effective search space:   679104
Effective search space used:   679104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no132_h23.g1 MSMg01no132_h23.g1 CHROMAT_FILE:
MSMg01no132_h23.g1 PHD_FILE: MSMg01no132_h23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:02 2005
         (307 letters)



>mm_chr6_33338455_33339160
          Length = 706

 Score =  557 bits (288), Expect = e-163
 Identities = 303/308 (98%), Gaps = 3/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctttttttaatgttcaaggtgttccaaagtttataatcagagcattgatggagaaag 60
           |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 tgcc-ttttttaatgttcaaggtgttccaaagcttataatcagagcattgatggagaaag 259

                                                                       
Query: 61  accatctagtttgtaatgagagtggagtaattatagtgactagatgagcctatg-tagtt 119
           |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 260 accatctagtttgtaatgagagtggagtaattatagtgactagatgagccta-gatagtt 318

                                                                       
Query: 120 tacacataatttgtaaccagaaaagagctgagcattttagagaattaggggatgatttac 179
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tacacatcatttgtaaccagaaaagagctgagcattttagagaattaggggatgatttac 378

                                                                       
Query: 180 cccagactctgtgctgtctccatcttttcgcacataggctaacactcaggtcttgtctgt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cccagactctgtgctgtctccatcttttcgcacataggctaacactcaggtcttgtctgt 438

                                                                       
Query: 240 actatctctcatgtattggcctgattctcagccagcccacctcctcagtatcactaggtg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 actatctctcatgtattggcctgattctcagccagcccacctcctcagtatcactaggtg 498

                   
Query: 300 tcatgtat 307
           ||||||||
Sbjct: 499 tcatgtat 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 706
Length adjustment: 9
Effective length of query: 298
Effective length of database: 697
Effective search space:   207706
Effective search space used:   207706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)