BAC Information

Click to search

BAC

Clone NameMSMg01-132M22
Chromosome6 (Build37)
Map Location 41,050,758 - 41,112,626
singlet/doubletdoublet
Overlap geneTcrb-V8.2
Upstream geneEG434008, Agk, E330009J07Rik, BC052883, Ssbp1, Tas2r137, Tas2r108, 1700016G05Rik, LOC669661, Olfr461, Olfr460, Clec5a, Tas2r138, Mgam, EG638904, Moxd2, LOC621968, BC048599, 1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790
Downstream geneLOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2, Sval1, Sval3, Sva, Tas2r139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-132M22.T7 (MSMg01no132_m22.b1)MSMg01-132M22.TJ (MSMg01no132_m22.g1)
ACCAG339949AG339950
length732706
length of high quality
(start - end)		690 (40 - 729)632 (73 - 704)
definitionCHROMAT_FILE: MSMg01no132_m22.b1 PHD_FILE: MSMg01no132_m22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:26 2005CHROMAT_FILE: MSMg01no132_m22.g1 PHD_FILE: MSMg01no132_m22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:47:26 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,050,758 - 41,051,589)(41,111,995 - 41,112,626)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTACAGAATCCGCGGAATTCT
AGAATAATAGTGCAGTTGACATGACCTGAATTATATACAAAACTGAGTCT
CTCTAGAGGCCCAGAGAAATTAAAAAATGAATTAATAGAAATTATATAAG
GAACTTAATTCAGATTTAAAACACTAGGCACTAGATGGTGCTAATGCACT
TTTCCTATTAAATACAGAATTATTCAAATTCTCTGAGAATAAAGAGTCAG
AGCCCTGACTTTCTCATGGTAGGTAGGATTTCACAGGTCAAAGCCAAGTT
AGTTATAATTAGCAAAATCAAACAAACATATCAAGTACATCAAACTCCTT
TTTACCCACCCCCAGTCATAAGCCAGCCACGACACTTAAATTCTTGGGCC
TTTTATGCTTTACAATTTATTAAGTTTATTAAGGAAATGAACCTTTTTTC
AGTGTCCCACTGGTAGAGATTTTTGTCTTTTTCTATTTAGAAATTATAAA
ATATTCCACCTGATGAAAAAATTATAAATGTCATAGTTTTATGGAGATAA
AATACCTTTTAATATTAAAAATTTGATGGTGTATAAATAAAATGCTAATG
ATATCCTTATATCCTATCTATTATTAGTAACCAATTTTTCCACTTTAGTG
TTTTGTAATAATTCCTTTTCTCTATAAGCATGTGTCACTGACTCTTAACT
ACATATGCATATTTCTTATCTATTTTGATATA

ATAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTAGGAAATGCATTCATAGTTATCGTAG
GTCACACCTGCAAGGTACTAAGATATGTTCCACATCATGGATTATTGATC
AAAAGCAAGATACAAAGTCTAAGGATAGTATGAAAAAACAAGGCACCATT
ACCTCATCTTCTTCATCCCACAGAGAACTCTGCTTTACTTATAGTTCTTC
TGGCCTCCAGTACCTAGCTACATTCCAGGGCTATATTCTTTCAAGATTCA
CATGGAATTTCCTCTATGTGGTTAAGCATATAAATCCTGTACATCATGGG
CAAGAAATGGCCAGTTGTTTAAAGGAAATGTCTTTTACTTATTCATATTG
AATTCCAATTGTGGCTTTTTAAATCATGGAGAATTGAATGACCAGAAAAC
TCTCATCTCTACTTGATCCAAGAAGCTGCCTTTTGTCCTAGCTCTCTCTG
CCATTTAACTGTCTAATAATATCTATATTTGTAACAGTGAGACATTTTTT
AACTTAATCAAATAGAAACTGGTAAATGGAGCATGCTTGAAAGTTCGAGA
AATTCGTTGTATACCCTGCTGACTGTAGTGAATCATACTATTGCTTGAAA
ACTGGCAAGAACACAGGTCTTAAATATTCTCACACAAAGATGAAAGGAAG
AAATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no132_m22.b1 MSMg01no132_m22.b1 CHROMAT_FILE:
MSMg01no132_m22.b1 PHD_FILE: MSMg01no132_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:26 2005
         (690 letters)



>mm_chr6_41050699_41051789
          Length = 1091

 Score =  913 bits (472), Expect = 0.0
 Identities = 671/832 (80%), Gaps = 146/832 (17%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctagaataatagtgcagttgacatgacctgaattatatacaaaactgagtctctc 64
           ||||||||||||||||||| |||||||||||||||||||||| ||||||| |||||||||
Sbjct: 60  gaattctagaataatagtgtagttgacatgacctgaattataaacaaaaccgagtctctc 119

                                                                       
Query: 65  tagaggcccagagaaattaaaaaatgaattaatagaaattatataaggaacttaattcag 124
           |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct: 120 tagaggcccagagaaattaaaacatgaattaatagaaattatacaaggaacttaattcag 179

                                                                       
Query: 125 atttaaaacactaggcactagatggtgctaatgcacttttcctattaaatacagaattat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 atttaaaacactaggcactagatggtgctaatgcacttttcctattaaatacagaattat 239

                                                                       
Query: 185 tcaaattctctgagaataaagagt------------------------------------ 208
           ||||||||||||||||||||||||                                    
Sbjct: 240 tcaaattctctgagaataaagagtctctctctctctctctctctctctctctctctctct 299

                                                                       
Query: 209 -----------------------------------------------------------c 209
                                                                      |
Sbjct: 300 ctctccacatacacaacacacatacattttcctactttgctttttattgttgtaataaac 359

                                                                       
Query: 210 a-------------------------------ga-------------------gccctga 219
           |                               ||                   |||||||
Sbjct: 360 aactgtaactgaaagtaatttgggaaggaaaggatttatttagttcacaggttgccctga 419

                                                                       
Query: 220 ctttctcatggtaggtaggatttcacaggtcaaagccaagttagttataattagcaaaat 279
           ||||||||||||||| ||||||| |||||||||||||||||||||||||||||  |||||
Sbjct: 420 ctttctcatggtaggcaggatttaacaggtcaaagccaagttagttataattattaaaat 479

                                                                       
Query: 280 caaacaaacatatcaagtacatcaaactcctttttacccacccccagtcataagccagcc 339
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 caaacagacatatcaagtacatcaaactcctttttacccacccccagtcataagccagcc 539

                                                                       
Query: 340 acgacacttaaattcttgggccttttatgctttacaatttattaagtttattaaggaaat 399
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 acgatacttaaattcttgggccttttatgctttacaatttattaagtttattaaggaaat 599

                                                                       
Query: 400 gaaccttttttcagtgtcccactggtagagatttttgtctttttctatttagaaattata 459
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 600 gaaccttttttcagtgtcccactggtatagatttttgtctttttctatttagaaattata 659

                                                                       
Query: 460 aaatattccacctgatgaaaaaattataaatgtcatagttttatggagataaaatacctt 519
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 660 aaatattccacctgatgaaaaaattataaatgtcatagttttatggagataaaatacctt 719

                                                                       
Query: 520 ttaatattaaaaatttgatggtgtataaataaaatgctaatgatatccttata-tcctat 578
           |||||||||||||||  |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 720 ttaatattaaaaattcaatggtgtataaataaaatgctaatgatatccttatactcctat 779

                                                                       
Query: 579 ctattattagtaaccaatttttccactttagtgttttgtaataattccttttctctataa 638
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 780 ctattattagtaaccaatttttccactttagtgttttgtaataattccttttctctataa 839

                                                               
Query: 639 gcatgtgtcactgactcttaactacatatgcatatttcttatctattttgat 690
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 840 gcatgtgtcactgactcttaactgcatatgcatatttcttatctattttgat 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1091
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1081
Effective search space:   735080
Effective search space used:   735080
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no132_m22.g1 MSMg01no132_m22.g1 CHROMAT_FILE:
MSMg01no132_m22.g1 PHD_FILE: MSMg01no132_m22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:47:26 2005
         (632 letters)



>mm_chr6_41111795_41112826
          Length = 1032

 Score = 1183 bits (612), Expect = 0.0
 Identities = 627/632 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaggaaatgcattcatagttatcgtaggtcacacctgcaaggtactaagatatgttcca 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 832 ctaggaaatgcattcatagttatcgtaggtcacacctgcaaggtattaagatatgttcca 773

                                                                       
Query: 61  catcatggattattgatcaaaagcaagatacaaagtctaaggatagtatgaaaaaacaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 772 catcatggattattgatcaaaagcaagatacaaagtctaaggatagtatgagaaaacaag 713

                                                                       
Query: 121 gcaccattacctcatcttcttcatcccacagagaactctgctttacttatagttcttctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 712 gcaccattacctcatcttcttcatcccacagagaactctgctttacttatagttcttctg 653

                                                                       
Query: 181 gcctccagtacctagctacattccagggctatattctttcaagattcacatggaatttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 gcctccagtacctagctacattccagggctatattctttcaagattcacatggaatttcc 593

                                                                       
Query: 241 tctatgtggttaagcatataaatcctgtacatcatgggcaagaaatggccagttgtttaa 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 tctatgtggttaaacatataaatcctgtacatcatgggcaagaaatggccagttgtttaa 533

                                                                       
Query: 301 aggaaatgtcttttacttattcatattgaattccaattgtggctttttaaatcatggaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 aggaaatgtcttttacttattcatattgaattccaattgtggctttttaaatcatggaga 473

                                                                       
Query: 361 attgaatgaccagaaaactctcatctctacttgatccaagaagctgccttttgtcctagc 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 472 attgaatgaccagaaaactctcatctctacttgatccaaaaagctgccttttgtcctagc 413

                                                                       
Query: 421 tctctctgccatttaactgtctaataatatctatatttgtaacagtgagacattttttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 tctctctgccatttaactgtctaataatatctatatttgtaacagtgagacattttttaa 353

                                                                       
Query: 481 cttaatcaaatagaaactggtaaatggagcatgcttgaaagttcgagaaattcgttgtat 540
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cttaatcaaataaaaactggtaaatggagcatgcttgaaagttcgagaaattcgttgtat 293

                                                                       
Query: 541 accctgctgactgtagtgaatcatactattgcttgaaaactggcaagaacacaggtctta 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 accctgctgactgtagtgaatcatactattgcttgaaaactggcaagaacacaggtctta 233

                                           
Query: 601 aatattctcacacaaagatgaaaggaagaaat 632
           ||||||||||||||||||||||||||||||||
Sbjct: 232 aatattctcacacaaagatgaaaggaagaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 632
Length of database: 1032
Length adjustment: 10
Effective length of query: 622
Effective length of database: 1022
Effective search space:   635684
Effective search space used:   635684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |