BAC Information

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BAC

Clone NameMSMg01-133E02
Chromosome6 (Build37)
Map Location 7,482,873 - 7,483,178
singlet/doubletsinglet
Overlap genenone
Upstream geneShfm1, LOC545826, Dlx6as, Dlx5, Acn9, EG667500
Downstream geneTac1, LOC667511, Asns, EG667529, C1galt1, LOC100040661, Col28a1, BC020002, Rpa3, LOC100036521, LOC667028, A430035B10Rik, Glcci1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133E02.T7 (MSMg01no133_e02.b1)MSMg01-133E02.TJ (MSMg01no133_e02.g1)
ACCAG340283AG340284
length683712
length of high quality
(start - end)
323 (38 - 360)588 (72 - 659)
definitionCHROMAT_FILE: MSMg01no133_e02.b1 PHD_FILE: MSMg01no133_e02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:01 2005CHROMAT_FILE: MSMg01no133_e02.g1 PHD_FILE: MSMg01no133_e02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
AAGCTTCCTGAGCTTAGATCACATAATTAAGGTACAGCTTAGCCTTCTTT
AAACAAATGGATTTGAAACCCACCTTGAAAATGAGATGAAAGAAAGATTT
GCTTTAATATTAACTTCTTGTTCTTGCAGAAAGATCCACAATAGAGTATT
AAAATTGGAATAGCATCTTAGGGGCAATATTGGCACTGTTTTTCCAGGTG
GTTAAACTGATAGCCAACGGCTGTGCAAAACCTAGATTCTATTTTTTTTT
TTTTGCTAGCTCTTCCCCCCTGAGCTTGGTTTTACATAACTATAAGAATT
TTATCAGAGTTGAAGCACCTCCGACTGACCATTAATGACAAGTTTTTGAG
ATGTTTAAAACATGATATTACTTACAAAAATTTATTCTTATTGCTGACAT
TAAGACATGGTCAGGAACACTGATAGTGTGGCAATTTGGTAGGGCAAGTT
CTTAGGGCTTTTATTGCTATGAGGCAGGCAGATTTCTGAGTTCGAGGCCA
GCCTGGTCTACAGAGTGAGTTTCAGAACAGCCAGCGCTATGCAGAGAAGC
CCTGTCCTCTAAAACCAACCAAAAACCACCCTCCCCCGAGAGAGAGATGC
CTATATTACAAAAAATTTAAAAAAGTTTCTTCC
GATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAAACCAAATGGCTGAGAAG
CACCTGAAAAAATGCTCAGCATTCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCATCTCACACCAGTCAGAATGGCTAAGATAAAAA
ATTCAGATGACAGCAGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTC
CTTCATTGTTGGTGGCATTGCAAGCTTGTACAACTACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAATTGGACATAGTACTACCAGAGGATCCCGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAAAAAATGTGGT
ACATTTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTATTCAAATGTTTGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACAATCACAAAAGAACTCAAATGATATGTACTCACTGATAAGTGGAT
ATTAGCCCAGAAACTTAGTATACCCGAGATATAAGAGAAGAAGAACGAAG
ACCAAAGTGTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_e02.b1 MSMg01no133_e02.b1 CHROMAT_FILE:
MSMg01no133_e02.b1 PHD_FILE: MSMg01no133_e02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:01 2005
         (323 letters)



>mm_chr6_7482680_7483399
          Length = 720

 Score =  505 bits (261), Expect = e-147
 Identities = 298/315 (94%), Gaps = 9/315 (2%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattcaagcttcctgagcttagatcacataattaaggtacagcttagccttctttaaac 67
           |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 499 gaattcaagcttccagagcttagatcacataattaaggtacatcttagccttctttaaac 440

                                                                       
Query: 68  aaatggatttgaaacccaccttgaaaatgagatgaaagaaagatttgctttaatattaac 127
           ||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aaatggatttgaaagacaccttgaaaatgagatgaaagaaagatttgctttaatattaac 380

                                                                       
Query: 128 ttcttgttcttgcagaaagatccacaatagagtattaaaattggaatagcatcttagggg 187
           ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 379 ttcttgttcttgcaggaagatccacgatagagtattaaaattggaatagcatcttagggg 320

                                                                       
Query: 188 caatattggcactgtttttccaggtggttaaactgatagccaacggctgtgcaaaaccta 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 caatattggcactgtttttccaggtggttaaactgatagccaacggctgtgcaaaaccta 260

                                                                       
Query: 248 gattctatttttttttttttgctagctcttcccccctgagcttggttttacataactata 307
           |||||||   ||||||||||||||||||||| ||||||||||||||| |||      |||
Sbjct: 259 gattcta---ttttttttttgctagctcttctcccctgagcttggttctac------ata 209

                          
Query: 308 agaattttatcagag 322
           |||||||||||||||
Sbjct: 208 agaattttatcagag 194


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 720
Length adjustment: 9
Effective length of query: 314
Effective length of database: 711
Effective search space:   223254
Effective search space used:   223254
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)