Query= MSMg01no133_o11.b1 MSMg01no133_o11.b1 CHROMAT_FILE:
MSMg01no133_o11.b1 PHD_FILE: MSMg01no133_o11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:50 2005
(552 letters)
>mm_chr6_40163395_40164348
Length = 954
Score = 920 bits (476), Expect = 0.0
Identities = 497/504 (98%), Gaps = 2/504 (0%)
Strand = Plus / Minus
Query: 4 ggaattcttcttca-tacacctatgagataatacatgtttattgttt-aagttgctaaaa 61
|||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 504 ggaattcttcttcaggaaacctatgagataatacatgtttattgtttaaagttgctaaaa 445
Query: 62 ataaccagtggcaaacccacaaacaacatatgtctaggcaagaagaggcacacgatagaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ataaccagtggcaaacccacaaacaacatatgtctaggcaagaagaggcacacgatagaa 385
Query: 122 atggaaactaattaaactgtagagtatgcctggcgcactcactgagttgctggccgagga 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atggaaactaattaaactgtagagtatgcctggcgcactcactgagttgctggccgagga 325
Query: 182 gactctgaaggggaaccttggagtagggaccgaaacctaaggagagagacatctgtgagt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 gactctgaaggggaaccttggagtagggaccgaaacctaaggagagagacatctgtgagt 265
Query: 242 tgttgctaaggtcaaggatattgggcagctccagggcctgagccaatccttctatatgtt 301
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 264 tgttgctaaggtcaaggatattgggcagctccagggcctgagccaacccttctatatgtt 205
Query: 302 agaacaaaaaggcagccagtgtgtgtggagcaccatgagtgtacaggaagaaacagaaag 361
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 agaacagaaaggcagccagtgtgtgtggagcaccatgagtgtacaggaagaaacagaaag 145
Query: 362 agagctgagagaggtgaggtcagccagaatataaaagccattaaaagaaaggtaaggaac 421
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 144 agagctgagagaggtgaggtcagccagaatataaaagccgttaaaagaaaggtaaggaac 85
Query: 422 ttgagttttaagttcaactgaaaatcattagattactactgacaggaggtgggtgacaca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 ttgagttttaagttcaactgaaaatcattagattactactgacaggaggtgggtgacaca 25
Query: 482 tctggttcatagtttaaacgattt 505
||||||||||||||||||||||||
Sbjct: 24 tctggttcatagtttaaacgattt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 954
Length adjustment: 10
Effective length of query: 542
Effective length of database: 944
Effective search space: 511648
Effective search space used: 511648
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_o11.g1 MSMg01no133_o11.g1 CHROMAT_FILE:
MSMg01no133_o11.g1 PHD_FILE: MSMg01no133_o11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:50 2005
(567 letters)
>mm_chr6_40057466_40058432
Length = 967
Score = 1031 bits (533), Expect = 0.0
Identities = 557/567 (98%), Gaps = 5/567 (0%)
Strand = Plus / Plus
Query: 1 ctgctaatgtttttcagttttctgtttctttgtttgtttttttgtttttcgtttcaaact 60
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||
Sbjct: 206 ctgctaatgtttttcagttttctgtttc----tttgtttttttgttttt-gtttcaaact 260
Query: 61 tcacattagtagaatcttacgtctactacctctttgtgggtggagggatactgggacaat 120
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 tcacattagtagaatcttatgtctactacctctttgtggatggagggatactgggacaat 320
Query: 121 gaaacccagcctctcctagtaagaagagaaacagataggcttccttctgttcttactggg 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 321 gaaacccagcctctcctagtaagaagagaaacagacaggcttccttctgttcttactggg 380
Query: 181 gagggatgaggagtttcaaatccactgaaactaggtagtgtgataggaaaatccctggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggatgaggagtttcaaatccactgaaactaggtagtgtgataggaaaatccctggcc 440
Query: 241 cgagccaagacacctgggccattaaaaagtatgactaggccccttgagttctctgtctct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 cgagccaagacacctgggccattaaaaagtatgactaggccccttgagttctctgactct 500
Query: 301 acagtaggaaccaaaagagcattgtgttgttcgagtcctactcctcttgttggtagatgg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acagtaggaaccaaaagagcattgtgttgttcgagtcctactcctcttgttggtagatgg 560
Query: 361 ccctgacttcaccctctgctcactcctgctgccaccctgccaccagcctcacagtctact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ccctgacttcaccctctgctcactcctgctgccaccctgccaccagcctcacagtctact 620
Query: 421 caggagaaaagcttgaaattgtgtcataaatcttccttgacattggcccaagggccctgg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caggagaaaagcttgaaattgtgtcataaatcttccttgacattggcccaagggccctgg 680
Query: 481 cccctgtcatttaccaggcctagggtaagtgatccagggcaaggatgctttctgtttctt 540
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cccctgtcatttaccaggcccagggtaagtgatccagggcaaggatgctttctgtttctt 740
Query: 541 atcctataagaaagctgaagctcattg 567
|||||||||||||||||||||||||||
Sbjct: 741 atcctataagaaagctgaagctcattg 767
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 567
Length of database: 967
Length adjustment: 10
Effective length of query: 557
Effective length of database: 957
Effective search space: 533049
Effective search space used: 533049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
