BAC Information

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BAC

Clone NameMSMg01-133P09
Chromosome6 (Build37)
Map Location 75,436,482 - 75,436,799
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668132, LOC668136, LOC621306, LOC100042942, LOC668143
Downstream geneEG668145, EG546907, LOC100042952, LOC668153
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133P09.T7 (MSMg01no133_p09.b1)MSMg01-133P09.TJ (MSMg01no133_p09.g1)
ACCAG340796AG340797
length696694
length of high quality
(start - end)
646 (45 - 690)319 (376 - 694)
definitionCHROMAT_FILE: MSMg01no133_p09.b1 PHD_FILE: MSMg01no133_p09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:55 2005CHROMAT_FILE: MSMg01no133_p09.g1 PHD_FILE: MSMg01no133_p09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGC
GGAATTCATATTTGCCTCATGGCTTGAGGCTGTACTTGATTATGGTGGGA
AACTGTGGTGTCAAAAGTATAAGGTAGCTGGCCACAAAGCATCTATTATC
AGTAAACAGAGAGAGATAAATCTTGATTATCAATTAACATATGCTAAATA
AACAGCTGCCTGGTCAGTCAACCCACAGCAATTAAACCTTTCTCGAAAAA
AAAATCATCTTAGGTACTCCTAAAGATGTGTTTCCATGGTGGTTCTAATG
TCTAGTCTAAAAAGTTGATAATTAATGTTAACTGCTGCATATTCAAGAAA
AAAATACTGTGTTCACAGCCTTAAAAATGGATGGACCTGGAGGGCATCAT
CCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCAC
TGATAAGTGGATATTAGCCCAAAACCTAGGATACCCAAGATATAAGATAC
AATTTCCTAAACACATGAGACTCAAGAGGGGTGAGGACTGAAGTGTGGAC
ACTATGCCCCTCCTTGGAAGTGGGAGAAGGACACCCTTGGAGGGAGTTGC
AGAGACAAATTTTGGAGCTGAGATGAAGGGATGGACCATGTAGAGACTGC
TATATCCAGGGATCCACCCCATAATCAGCATCCAAACGCTGACACC
ATCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTAGGGGAGATGAGAGTGAAGAAAACT
AAACACATAGGACAGAATGCACTTGAAGGAGTAAAGAAGGTTCATGTGTT
TGGTTCCACTTAGAAAATGTTCACTGGCCATGAGTTATTTGAATTTCATA
GTTGGAATTGGTTTGAGTACCTCATGACTATCTGCTGTAGTCTTATTCTC
AAATATAAATCTCTGTTGAAATTAAAAACTAGCATTATCAGAAGGCTAGG
TTTGGTGAAAATATGATGGCTAACAAAGCAGAGGGAAAGCATTGAAGCTG
ACAATCATTCTTAAATGACATATAAAACTTAAAAATCTTATTAATGAAAA
CTCAGCGAGAATACAAAAGTTTTGAACAAGGTTGAGACCTAGGGAGTAAG
GGTAGGATGGAGAGAGTTTAGTCAATGGGAACTAAACATAGGAGCTATAG
GATGATTACCAACAGTAAAAAGTTCATCCTAAACAGTCAAAAGCCGATGC
TAATGAGTTGAGGCACCTAAAGAAAATAGGTAGGAAAAGGTACATGCCAA
GGAGAAGAAAACAGATGAAACTATGGAAGGAGGTGGTGGTATTTCTGCAA
ATCCTGGCATGGCCTCAGCTCTAGGAATCATTGTGATATTTCAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_p09.g1 MSMg01no133_p09.g1 CHROMAT_FILE:
MSMg01no133_p09.g1 PHD_FILE: MSMg01no133_p09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:55 2005
         (319 letters)



>mm_chr6_75436282_75437000
          Length = 719

 Score =  607 bits (314), Expect = e-178
 Identities = 317/318 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttaaaaatcttattaatgaaaactcagcgagaatacaaaagttttgaacaaggttga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aacttaaaaatcttattaatgaaaactcagcgagaatacaaaagttttgaacaaggttga 260

                                                                       
Query: 61  gacctagggagtaagggtaggatggagagagtttagtcaatgggaactaaacataggagc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacctagggagtaagggtaggatggagagagtttagtcaatgggaactaaacataggagc 320

                                                                       
Query: 121 tataggatgattaccaacagtaaaaagttcatcctaaacagtcaaaagccgatgctaatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tataggatgattaccaacagtaaaaagttcatcctaaacagtcaaaagccgatgctaatg 380

                                                                       
Query: 181 agttgaggcacctaaagaaaataggtaggaaaaggtacatgccaaggagaagaaaacaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agttgaggcacctaaagaaaataggtaggaaaaggtacatgccaaggagaagaaaacaga 440

                                                                       
Query: 241 tgaaactatggaaggaggtggtggtatttctgcaaatcctggcatggcctcagctctagg 300
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaaactatggaaggagatggtggtatttctgcaaatcctggcatggcctcagctctagg 500

                             
Query: 301 aatcattgtgatatttca 318
           ||||||||||||||||||
Sbjct: 501 aatcattgtgatatttca 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)