Query= MSMg01no134_a06.b1 MSMg01no134_a06.b1 CHROMAT_FILE:
MSMg01no134_a06.b1 PHD_FILE: MSMg01no134_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:00 2005
(791 letters)
>mm_chr6_45800952_45802143
Length = 1192
Score = 1404 bits (726), Expect = 0.0
Identities = 774/794 (97%), Gaps = 9/794 (1%)
Strand = Plus / Plus
Query: 1 tatcctagccaatagtggaaatccttacccactccctaagatctatataacccttgttca 60
||||||||||||||||||||||||| |||||||||| |||||||||||| ||||||||||
Sbjct: 201 tatcctagccaatagtggaaatcctgacccactccccaagatctatatatcccttgttca 260
Query: 61 tcttgaataaagttgagctgttgcactgaaggtgatctcagaagtcaatctgtccaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcttgaataaagttgagctgttgcactgaaggtgatctcagaagtcaatctgtccaattt 320
Query: 121 tgctccctttgttctcttgggcctgtgtacaacaacaaccagagagggtcacagatatct 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 321 tgctccctttgttctcttgggcctgtgtccaacaacaaccagagagggtcacagatatct 380
Query: 181 atttttcagtgtctgaaaagtttatctct-----tttattttagatctatatgtgttaaa 235
||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 381 atttttcagtgtctgaaaagtttatctctcttttttttttttagatctatatgtgttaaa 440
Query: 236 ttaaatacaacctgctgagttagttatgtgtgaatgcgtttacatagctgaccacttggt 295
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 441 ttaaatacaacctgctgagttagttatgtgtgaatgtgtttacatagctgaccacttggt 500
Query: 296 actggagaagcaactaggtgcctcatcccttgaaggactaaactccctctcactatagtc 355
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actggagaagcaactaggcgcctcatcccttgaaggactaaactccctctcactatagtc 560
Query: 356 attagttaatctttacctttttattaagagctgtggactgagaaattttctctatccact 415
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 561 attagttaatctttaccttttta---agagctgtggactgagaaattttctctatccact 617
Query: 416 ttatccatgttgtcctgtcccctgctgttatcattcaggtcttgttgaggcaagcatatt 475
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 618 ttatccatgttgtcctgtcccctgctgttatcattcatgtcttgttgaggcaagcatatt 677
Query: 476 gttgagattttatgggtattgacatttttatatctagaatatataaccacactagactcc 535
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 678 gttgaaattttatgggtattgacatttttatatctagaagatataaccacactagactcc 737
Query: 536 cctcttctctggctcataaaatcttcttgccctctttcacacaatggaccctt-agctgt 594
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 738 cctcttctctggctcataaaatcttcttgccctctttcacacaatggaccctttagctgt 797
Query: 595 aggtatagagactgtgttgtagattttccaattgattctggagagttcacagtggggtat 654
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 798 aggtatagagactgtgttgtagattttccaattgattctggagagttcacagtgaggtat 857
Query: 655 ttctgtattttgactagttgtaacttcctgtaatgctctctatcatctgaaagagtaagc 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 ttctgtattttgactagttgtaacttcctgtaatgctctctatcatctgaaagagtaagc 917
Query: 715 ttctttgctgtatgtgagttttttattgttttgctgtgctttgtttatttgcttttaata 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 ttctttgctgtatgtgagttttttattgttttgctgtgctttgtttatttgcttttaata 977
Query: 775 atatccattttttt 788
||||||||||||||
Sbjct: 978 atatccattttttt 991
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 791
Length of database: 1192
Length adjustment: 10
Effective length of query: 781
Effective length of database: 1182
Effective search space: 923142
Effective search space used: 923142
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_a06.g1 MSMg01no134_a06.g1 CHROMAT_FILE:
MSMg01no134_a06.g1 PHD_FILE: MSMg01no134_a06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:00 2005
(763 letters)
>mm_chr6_45915529_45916691
Length = 1163
Score = 1377 bits (712), Expect = 0.0
Identities = 747/760 (98%), Gaps = 5/760 (0%)
Strand = Plus / Minus
Query: 1 gatgataacaaaggattttactgtaaatacttatttggaataatacaaagatattattat 60
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 946 gatgataacaaaggattttactgtaaataatgatttggaataatacaaagatattattat 887
Query: 61 tctattgatccataaaactacaataaatgtaggatttccgatgaaaaataaatgtggttg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 886 tctattgatccataaaactacaataaatgtaggatttccgatgaaaaataaatgtggctg 827
Query: 121 tgcataccacacacatttaaattccatttgttgattatagaaaacccactttaacagaaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 tgcataccacacacatttaaattccatttgttgattatagaaaacccactttaacagaaa 767
Query: 181 ggtga-ttttttctatcccttcatacatgcataattaacttattgattatttaatttatt 239
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 ggtgatttttttctatcccttcatacatgcataattaacttattgattatttaatttatt 707
Query: 240 cacttcatctacatttattaagtttctccttttatgttgggctgagtgctgcaggtgcac 299
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 706 cacttcatctacatttattaagtttctccttttatgttggggtgagtgctgcaggtgcac 647
Query: 300 atgagtaaggcgtgtaatatcaatctaccacacaaagatgtaatctatttcatttcagag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 atgagtaaggcgtgtaatatcaatctaccacacaaagatgtaatctatttcatttcagag 587
Query: 360 caactgatgtgtttaccttcaataatcattctttgtttccatggggtaagatgaccttga 419
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 586 caactgatgtgtttaccttcaataatcattctttgtttccacggggtaagatgaccttga 527
Query: 420 agtactcttttgcttacatcatattatttccatatacaagggcaaggccatgcattagaa 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 agtactcttttgcttacatcatattatttccatatacaagggcaaggccatgcattagaa 467
Query: 480 tgcttacaccctggaatcaagttcacaatgacaagagacagagagaagtagatatataag 539
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 tgtttacaccctggaatcaagttcacaatgacaagagacagagagaagtagatatataag 407
Query: 540 ttacagcctggctgagggatatttgacatctctgagtgaggcccaccattacctagcata 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttacagcctggctgagggatatttgacatctctgagtgaggcccaccattacctagcata 347
Query: 600 ttctaaataataatttatagcagacacagtatacagccttagcaagtagtaaactggggt 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 ttctaaataataatttatagcagacacagtatacagccttagcaagtagtaaactggggt 287
Query: 660 tgaaattctcattctcagactgactttgcagtttttatttttaaacattagctgagtacc 719
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 286 tgaaattctcattctcagactgactttgcagttttaatttttaaacattagctgagtacc 227
Query: 720 gtgactctccagtttggnggggggtgggggtggaatatgt 759
|||||||||||||||| ||||||||| ||||||||||
Sbjct: 226 atgactctccagtttgg-ggggggtgg---tggaatatgt 191
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 763
Length of database: 1163
Length adjustment: 10
Effective length of query: 753
Effective length of database: 1153
Effective search space: 868209
Effective search space used: 868209
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
