BAC Information

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BAC

Clone NameMSMg01-134D10
Chromosome6 (Build37)
Map Location 45,765,859 - 45,766,508
singlet/doubletsinglet
Overlap geneCntnap2
Upstream geneLOC100040210
Downstream geneRbpsuh-rs3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134D10.T7 (MSMg01no134_d10.b1)MSMg01-134D10.TJ (MSMg01no134_d10.g1)
ACCAG340983AG340984
length1,1661,186
length of high quality
(start - end)
355 (491 - 845)660 (130 - 789)
definitionCHROMAT_FILE: MSMg01no134_d10.b1 PHD_FILE: MSMg01no134_d10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:24 2005CHROMAT_FILE: MSMg01no134_d10.g1 PHD_FILE: MSMg01no134_d10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNGGGTCACTGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGATCTTTCCAGACTTTTATCATGAATGGGTGTTGGATTTTGTCAA
ATGATTTCTCCACATCTAATGAGATGACCATGTGGTTCTTGACTTTGAGT
TTGTTTATATAATGGATTACGTTGATGGATTCCCATATATTTAACCATCC
CTGGATCCCTGTCATGAAACCTACTTGGTCAGGATGGATGATTATTTTGA
TGTGTTCTTGGATTCAGTTAGCAAGAACTTTATTGAGGATTTTTGCATTG
ATATTCATAAGGGAAAGTGCTCTGAAGATCTCTATCTTTGTTGGGTCTTT
TTGTGTATCAGTGTAATTATGGCTTCATAGAATGAGTTGGGTATAGTACC
TTCTGTTTCTATTTTGTGGATTAGTTTGTGAAGAACTGAGATTATTTTTT
CTTCCCCCGTCTGATAGAACTCTGCACTAAACACATCTGGTCCTGGGCTT
TTTTTGGTTGGGAGATTATTAGTGACTGCTTCTATTTCTTTAGGGAATAT
AGGACTGTTTAAGTCATTAACCTGATCTTGATTTAACTTTGGTACCTGGT
ATCTGTCTAGAAACTTGTCCATTTCATCCAGGTTCTCCAGTTTTGTTGAG
TATAGCCTTTTGTAGAAGGATCTGAAGGTGTTTTGGCTTTCTTCAGGATC
TGTTGTTATGTCTCCCTTTTCATTTCTGATTTTGTTAATTAGAATGCTTT
CCCTGTGCCCTTTAGTGAGTCTGGCTAAGGGTTTATCTATCTTGTTGATT
TTCTCAAAGAACCAACTCCTTGATTGGTTGATTCTTTGAATAGTTCTTCT
TGTTTCCACTTGGTTGATTTCGCCCCTGAGTTTGATTATTTCCTGCTGTC
CACTCCTCCTGGGGGAAATTTGCTTCCTTTTGTTCTAGAGCTTTTAGATG
TGTTATCCAGCTTGTAAAGTGGTGCCCCCTCTAGTTTCCTTTTTGGATCC
CCCCCCAAGATTTAAAATTTTCCCCCTTTAAAAAAGCTTTTCTTGGTGCC
CACAAAAATTTGGCACTTTTTTTACATTCTTTTTTCTTTAAATCTCCCAA
AAACCCCCTAAATATCTTTTTTTTTTATCCCTCCCTGTCCTCAGCTTTAT
TTTATTTATAAACATG
NNGGAAGTATTNNNNNAATGATGGAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTAGTAAACTACAGGATATA
ACATCAAGTGTTGTAGACTTTTGTCCTCTGAATTGAAACCTACAATCCTA
GAGGTAAGAGAGGCTCCTTAGATTCAGATAGTAAACAAACATCCAAGTCT
TAGGAACTAAATGAAGCTTAAAAGATTCAGGAAGACTGGAAATTGCAAGA
CTCATATGTTATATACTCAAGCTTAACTTAACAATTGCTGAAAAGATAAT
GCTTCCCAATCAACAAGTAATGATGGAAGCCTGAGGGGTATAGTTCTCAG
GAATAGGTACTTGTGCTTGTATGGGATTTTCTACGATGCAGATGCTTTCA
ATTCATCCTTGCTTCCATAAGAAAGTCTTCAACCATGCTTTTTTGAACAT
CTCTTCCATTGATACCTGTTGCCTTAACTGCAGTGAGCATATATTTGTAC
ACCTCTTCTAAAATATTCACAGATTGTATGAATTGAAAAATATAGTATTT
ATAAGGAAGAAGACAATTTGAAGTCAGGGATTAAATTTTATTTAAATTTA
TAACAACTACAAACATCTGAGAATAAATTTATCCACGATGTGCAGTTTTT
CCAGAATGAAAGTTATGGGGAACCAGAACTTAAGTGTTTCTTGCTACCTG
AGCTACAACCCTATTGCTACAGCCAATAGCATCAATTTGCCTATTAAATT
TCTTCTTACTATCTTGCCTCACTGCAGTGCATGCAAATTAAACATTCTAA
TCATGATTTGGATCATACCACTCCTTAGAGAGAAATAAGCAAGTGACTAG
ATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGGTAGATAGAC
TGACCGACCGACTGACCGACTGACTGAACCGACGACCGACTGACCGACCG
ACCGACCGATTGATAGATAGATAGATTGATCGGTTGTATGGATGGTAGAT
TGATTGATAGATTGATATGTTGGCTCGTTCCTTTTTTTCTCTCTTCTTTT
TTTCTTTTTTTTTTGTTCTCCTCTTCTCGCTCTCTTCTTCTTCCTTTTTT
CTCCCACACTCTCCCCTTCACTTTTTCTCCTTTCTCTTTTTTCACTTCTC
TTCTACTCTTTCTATTTCTCTTCTCCCCCTTTCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_d10.g1 MSMg01no134_d10.g1 CHROMAT_FILE:
MSMg01no134_d10.g1 PHD_FILE: MSMg01no134_d10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:24 2005
         (660 letters)



>mm_chr6_45765859_45766918
          Length = 1060

 Score = 1158 bits (599), Expect = 0.0
 Identities = 638/651 (98%), Gaps = 2/651 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaattgaaacctacaatcctagaggtaagagaggctccttagattcagatagtaaacaaa 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaattgaaacatacaatcctagaggtaagagaggctccttagattcagatagtaaacaaa 591

                                                                       
Query: 61  catc-caagtcttaggaactaaatgaagcttaaaagattcaggaagactggaaattgcaa 119
           || | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 590 ca-cacaagtcttaggaactaaataaagcttaaaagattcaggaagactggaaattgcaa 532

                                                                       
Query: 120 gactcatatgttatatactcaagcttaacttaacaattgctgaaaagataatgcttccca 179
           ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 531 gactcgtatgttatatactcaagcttaacttagcaattgctgaaaagataatgcttccca 472

                                                                       
Query: 180 atcaacaagtaatgatggaagcctgaggggtatagttctcaggaataggtacttgtgctt 239
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 471 atcaacaagtaatgatggaagcctgaggggtatagttctcaggagtaggtacttgtgctt 412

                                                                       
Query: 240 gtatgggattttctacgatgcagatgctttcaattcatccttgcttccataagaaagtct 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 gtatgggattttctacgatgcagatgctttcaattcatccttgcttccataagaaagtct 352

                                                                       
Query: 300 tcaaccatgcttttttgaacatctcttccattgatacctgttgccttaactgcagtgagc 359
           |||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 tcaaccatacttctttgaacatctcttccattgatacctgttgccttaactgcagtgagc 292

                                                                       
Query: 360 atatatttgtacacctcttctaaaatattcacagattgtatgaattgaaaaatatagtat 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 atatatttgtacacctcttctaaaatattcacagattgtatgaattgaaaaatatagtat 232

                                                                       
Query: 420 ttataaggaagaagacaatttgaagtcagggattaaattttatttaaatttataacaact 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 ttataaggaagaagacaatttgaagtcagggattaaattttatttaaatttataacaact 172

                                                                       
Query: 480 acaaacatctgagaataaatttatccacgatgtgcagtttttccagaatgaaagttatgg 539
           |||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||
Sbjct: 171 acaaacatctgagaataagtttatccacgatgtgcaacttttccagaatgaaagttatgg 112

                                                                       
Query: 540 ggaaccagaacttaagtgtttcttgctacctgagctacaaccctattgctacagccaata 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 ggaaccagaacttaagtgtttcttgctacctgagctacaaccctattgctacagccaata 52

                                                              
Query: 600 gcatcaatttgcctattaaatttcttcttactatcttgcctcactgcagtg 650
           ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 51  gcatcaatttgcctattaaatttcttcttactatcttgcatcactgcagtg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)