BAC Information

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BAC

Clone NameMSMg01-134J08
Chromosome6 (Build37)
Map Location 147,307,568 - 147,430,855
singlet/doubletdoublet
Overlap geneEG622129, Ccdc91
Upstream geneItpr2, 4933424B01Rik, Fgfr1op2, Tm7sf3, Surb7, EG626175, Stk38l, LOC621842, Arntl2, 1700023A16Rik, Ppfibp1, 1700034J05Rik, 2210417D09Rik, Mrps35, EG545893, Klhdc5, EG665288, LOC100039641, Pthlh
Downstream geneLOC100039712, LOC100039727, LOC100039736, Mlstd1, Ergic2, Tmtc1, 1110033J19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134J08.T7 (MSMg01no134_j08.b1)MSMg01-134J08.TJ (MSMg01no134_j08.g1)
ACCAG341262AG341263
length1,1881,176
length of high quality
(start - end)
342 (499 - 840)671 (135 - 805)
definitionCHROMAT_FILE: MSMg01no134_j08.b1 PHD_FILE: MSMg01no134_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:07 2005CHROMAT_FILE: MSMg01no134_j08.g1 PHD_FILE: MSMg01no134_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(147,430,515 - 147,430,855)(147,307,568 - 147,308,238)
sequence
AAATTANNNNNAATCACTGGGCGCTAAGACTCACTAAGGGAGAGGATCCG
CGGAATTCTCAGCACATACTTTTCATGTGATTCTGACTTTAACATATATC
ACCTATAATTTTTTACCTCCACACCTAGTAAGCACCTGAGCACCAATTCT
AATAAAGCTTCTATCATATGTAAACTAAACTCATCCTCTAGAACACAATT
CTCTCAAGTTACATTAAAAAGTCCTTTTCAGAAACATGCCTTCATGCCTT
AACTCTGGCGACTCAAAACCCTTTTGGGCAGTAGCTGGGCATGGTTTTTC
TTCATCACAGTGACACCTTGGCAAACCAAGCTTTCCCACGGAGAAGCCAG
GTACTCCCATAGTGCTGTTCGTGTGCTATAAGGTCAGCAGTGTCCTATAG
GAGTGCCACCTGGCCTTGCTTCTCTACTGAGTCAATTAATTTAATTAAAC
TCTTTTTTTGCCCCTTTCTGGGAGACAGGAAGGACATTCAAAATAATTTG
CTCAAGTTCCTTTCCTTCCTAAATTCTTCAAATTGTGTGTAAATCTTCAG
TTGGTGTTTTATATTTTATACTGAACCTTAAATAACTATACCAGCATTGC
CATAGTAACCAACAAGTAAAAACCTAGCCCCAAACTACACATGACTGAAG
GAACCAGAAAGTCACACCCTGGACCTACCTAACAAGGATGTGGAACTCTC
AGCTTATGGCCCTGCTTCCAAGGAGTTCTATAAATAAGGAAATGAATGTC
AGCACAAGCCAATGTGAAATGAAAGCCTATCTCTTTATTACATCTGCAAA
CCATTCAATCTTCCTCAGTTATAAAGATGATACAGACTATACCACACAAA
AGGTCACAGAGAAGCTCACTGGACAGACCCATCATATCAAGGGTCTATAG
ACAGGAAATTCCTTCTGTAACAATATACCTGTATATGCTCTATTATGACA
CTCCAAAACTAACAACCACCAGTAACTTTCTATCTATCAAATGGGAAAAA
AAATCAGGTAACTTCCGGCAACTAATTCTTGGAAAATTCCCAAAAACCCT
CCTTGGTTTTTTTCCCCCACCCCAGGGAAAAAAAGGGGCTCCTGGCGGCT
TTTTTACGGGGGAAAATCCCTTATGGAAAAAAATCTTTTTCTCCCCATAA
AAAAATTTTTGTTCCTTGGAACACAAGGCCTAAAAAGA
CCGTTCTTTTTTAAAGAAGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCCCTTTAGTCCTCAGAGAACAGGGCTTT
GCGTGATTGGTTTCATTCTACACCTCTGTTGCCTGCAACTGTGTTTGACA
CACATTGAGTCTTCTGGATGTGTTTATTTTCTGATCCACAAACTACTCAG
TTCCCCCTTTGAACAATCTAGGAACTGACACATCTTCAAAAGAGCCATTA
AAATAACTTGCAGGGTATTAAACCCCTAACAGTGAACAGTGATCAGATGT
TTTCTCTTGTTAAAGAATATTTGTACCCCACATTACCCCCAACACACACA
CTACTGTGCATAATACCCTACATGGTTAAGACAAAGCATTAGATTGCCTA
TCTTGGCTTCCTGGGTGCCTCAGCTCTGAGGGGCTGGGAACAGTCCATGC
CCTGAATGGACCAGAATGGACAAGTTTTCTGGGTTGTTAGTCATGGCAAG
TGTACAGCACATTCTCATTGGCCATTCTGTGCATGTCCCATACGTGAGCA
GTCAGTGTTAATAGTTGTTCATGTTCTTGTCTGTGTATCAATAAGCCCTA
TGATAGAGGCCACCCAGAAAGGAGGGAGAGGAGACACTTGCCTTGCATCC
GGCATCTGAGAGTAAACGTCACATTTGTTTCATGAGATTTGGGGGTCTTG
GGGATGGCAATGAAGACATTCAGAGCTTTGGGGAGAGAGCTTCTAGTCCT
GCTGACTAGCTTTTGTGACTTTGATGTGAAGTACTCCCCAGGTGGTGATG
ATGTTTTGAAAGCACATAGAACCTTTAGGAAGTGTGACCTTGACAGAAGA
AGTGAGTCAATGGGGGAGGGTCTTAAGAATTTTCAGTTCTTCCTACTTCC
TGTCATTTTTCTGTGACCAGTGTTCTCAGACTTTGCCAGCCAAGCCTTTT
CCCAGTGATGAATGGGATCCCCTCAAACTGTAGGTCAAAACTAAACTCCT
CCCCTTTAAATTGCTTTTGGCAGGTACCTGGCCCTTATCCCTGAAAAAAA
AAAAAAAATCCCTCCCCCCTCCCCCTGGCGTTTCCTTGGCCCCCTTGTGC
TTTTTCCCCAAGAGCATTGTAATAAACAAATCCTCCCAAAAAATAAGTTT
TCTTTTCAAATTACCCTTTATATCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_j08.b1 MSMg01no134_j08.b1 CHROMAT_FILE:
MSMg01no134_j08.b1 PHD_FILE: MSMg01no134_j08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:07 2005
         (342 letters)



>mm_chr6_147430315_147431056
          Length = 742

 Score =  659 bits (341), Expect = 0.0
 Identities = 341/341 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgctcaagttcctttccttcctaaattcttcaaattgtgtgtaaatcttcagttggtgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tgctcaagttcctttccttcctaaattcttcaaattgtgtgtaaatcttcagttggtgtt 482

                                                                       
Query: 61  ttatattttatactgaaccttaaataactataccagcattgccatagtaaccaacaagta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttatattttatactgaaccttaaataactataccagcattgccatagtaaccaacaagta 422

                                                                       
Query: 121 aaaacctagccccaaactacacatgactgaaggaaccagaaagtcacaccctggacctac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aaaacctagccccaaactacacatgactgaaggaaccagaaagtcacaccctggacctac 362

                                                                       
Query: 181 ctaacaaggatgtggaactctcagcttatggccctgcttccaaggagttctataaataag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ctaacaaggatgtggaactctcagcttatggccctgcttccaaggagttctataaataag 302

                                                                       
Query: 241 gaaatgaatgtcagcacaagccaatgtgaaatgaaagcctatctctttattacatctgca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaatgaatgtcagcacaagccaatgtgaaatgaaagcctatctctttattacatctgca 242

                                                    
Query: 301 aaccattcaatcttcctcagttataaagatgatacagacta 341
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaccattcaatcttcctcagttataaagatgatacagacta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 342
Length of database: 742
Length adjustment: 9
Effective length of query: 333
Effective length of database: 733
Effective search space:   244089
Effective search space used:   244089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no134_j08.g1 MSMg01no134_j08.g1 CHROMAT_FILE:
MSMg01no134_j08.g1 PHD_FILE: MSMg01no134_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:07 2005
         (671 letters)



>mm_chr6_147307368_147308438
          Length = 1071

 Score = 1274 bits (659), Expect = 0.0
 Identities = 668/671 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcaactgtgtttgacacacattgagtcttctggatgtgtttattttctgatccacaaact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 201 gcaactgtgtttgacacacattgagtcttctggatgtgtttattttctgatagacaaact 260

                                                                       
Query: 61  actcagttccccctttgaacaatctaggaactgacacatcttcaaaagagccattaaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 actcagttccccctttgaacaatctaggaactgacacatcttcaaaagagccattaaaat 320

                                                                       
Query: 121 aacttgcagggtattaaacccctaacagtgaacagtgatcagatgttttctcttgttaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacttgcagggtattaaacccctaacagtgaacagtgatcagatgttttctcttgttaaa 380

                                                                       
Query: 181 gaatatttgtaccccacattacccccaacacacacactactgtgcataataccctacatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaatatttgtaccccacattacccccaacacacacactactgtgcataataccctacatg 440

                                                                       
Query: 241 gttaagacaaagcattagattgcctatcttggcttcctgggtgcctcagctctgaggggc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttaagacaaagcattagattgcctatcttggcttcctgggtgcctcagctctgaggggc 500

                                                                       
Query: 301 tgggaacagtccatgccctgaatggaccagaatggacaagttttctgggttgttagtcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tgggaacagtccatgccctgaatggaccagaatggacaagttttctgggttgttagtcat 560

                                                                       
Query: 361 ggcaagtgtacagcacattctcattggccattctgtgcatgtcccatacgtgagcagtca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ggcaagtgtacagcacattctcattggccattctgtgcatgtcccatacgtgagcagtca 620

                                                                       
Query: 421 gtgttaatagttgttcatgttcttgtctgtgtatcaataagccctatgatagaggccacc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtgttaatagttgttcatgttcttgtctgtgtatcaataagccctatgatagaggccacc 680

                                                                       
Query: 481 cagaaaggagggagaggagacacttgccttgcatccggcatctgagagtaaacgtcacat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cagaaaggagggagaggagacacttgccttgcatccggcatctgagagtaaacgtcacat 740

                                                                       
Query: 541 ttgtttcatgagatttgggggtcttggggatggcaatgaagacattcagagctttgggga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgtttcatgagatttgggggtcttggggatggcaatgaagacattcagagctttgggga 800

                                                                       
Query: 601 gagagcttctagtcctgctgactagcttttgtgactttgatgtgaagtactccccaggtg 660
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gagagcttctaggcctgctgactagcttttgtgactttgatgtgaagtactccccaggtg 860

                      
Query: 661 gtgatgatgtt 671
           |||||||||||
Sbjct: 861 gtgatgatgtt 871


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 1071
Length adjustment: 10
Effective length of query: 661
Effective length of database: 1061
Effective search space:   701321
Effective search space used:   701321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)