BAC Information

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BAC

Clone NameMSMg01-135F14
Chromosome6 (Build37)
Map Location 17,924,896 - 18,084,846
singlet/doubletdoublet
Overlap geneWnt2, Asz1
Upstream geneTes, EG232599, Cav2, Cav1, Met, Capza2, St7
Downstream geneLOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7, LOC626180
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135F14.T7 (MSMg01no135_f14.b1)MSMg01-135F14.TJ (MSMg01no135_f14.g1)
ACCAG341833AG341834
length720721
length of high quality
(start - end)		681 (36 - 716)436 (65 - 500)
definitionCHROMAT_FILE: MSMg01no135_f14.b1 PHD_FILE: MSMg01no135_f14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:27 2005CHROMAT_FILE: MSMg01no135_f14.g1 PHD_FILE: MSMg01no135_f14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:27 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,084,227 - 18,084,846)(17,924,896 - 17,925,331)
sequence
TGGGCCGCTATACGACTCCTATATCCAGAGAATCCGCGGAATTCCAACAT
TTTTACATTGTGCTATGAGGTCCAGAAAAATTACTAGCCAAATGGTATAG
TAAACTTCTTATGTTTTAGACCCAAAATTTCATTAGTATTTGGTTTTGTT
TTTAAAGTACTTGCCATTTAATACACGTACAGAAAAGTACGCGAATCATT
TCCATGTAACTATCATCAGATTCATAGGTCTATTGTACCAGTTCTACAGC
CCACTTCCTGTCGCCTCTTCATCAGTTGTCCCCAAGGAACTATGTGACAT
GTGCACTCAGCTGTCATTCACTCTTAGTGTCTGCCTTCTTTAATTCAGTT
GTGTTTGTAGGACTCATGCAAGTTATTACATATAGAATTAGTAATTTAAG
TTCTTCCTTAAAAACTTTATTTTTAAATAACAGGGATGGGAAATCTGTTC
ATATATGTGAGTTCAGGTGGCCTCCGAGGCCAGAAGAGAGTTCTTGATCC
CTTGGAGCCAGAATTACAGGCTGTTGTGAGTCACCTGACGTCATTGCTGG
GGACCAAAGTTAGTTCTTCTGCAAGAGCAGTCAGCATTTTTAGCCACTGG
ACAAATATATGAAAAACTACAGCTGCCCATCAGCTTAGATGGTTAGAATA
TTAGGTCAGTCTCCTACAGAACCTTTATTTTCCTCTAAATAAGTTATAAC
AGCAACATTTTATTAAAAAG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXAGGCATATCTTCAATATGCTGATTTGATTTCTTTAT
GTATATATGAAGAAGTAGAACTGCTGGAATGTAAATCTGTTTTTAAAATT
TTTAAAGAATTGCCAGCTTCCCAAAAATGTCTGTACTAATTTAAAAATAC
GACCATGACTAAGTATTTACTGGATACCTCTCGAACATCTTTTTCAAGAT
CATTTTCCACAACACTACTCTGCCTTGCATAGCCTTTATTTCTGATGAAT
CTGCTGTGCCCTGCTGGGATATGGAACAATTCAAGGACTAGAATGTTTGG
TGCTTGAATCTCTTGTCCAAAAATTTGAGTGGAGTAGTGTAACTGTAGTA
CTTGGTGTTTTGGGACGTGTAGTTATGTAGTTTGTTTTGTCTTGTGATTA
TGGTGGCTTATTTTGTGCAGTGTTTCTCAGTTCTGGATTATGAACTCAGG
TTTGGCGCAGTTTGATATGTGAGAATCCTCTTATGTTCGCTTGAAAGTGT
CACCTTCAAATAGGCTTTGTGCCATATAGGCACCTCACTCTAAAACATGT
TCCTTATCCGTCCTTTCCTGTCTACACAATTTCTGAGATACCTAAACTAT
CTTAATCCCTATGCCAAATTCACCCGCCAATAGCATGCATGCCTTAATTC
GCCTCCTCTAAATCCTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_f14.b1 MSMg01no135_f14.b1 CHROMAT_FILE:
MSMg01no135_f14.b1 PHD_FILE: MSMg01no135_f14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:27 2005
         (681 letters)



>mm_chr6_18084227_18085307
          Length = 1081

 Score = 1168 bits (604), Expect = 0.0
 Identities = 616/620 (99%)
 Strand = Plus / Minus

                                                                       
Query: 3   ggaattccaacatttttacattgtgctatgaggtccagaaaaattactagccaaatggta 62
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ggaattccaacatttttaaattgtgctatgaggtccagaaaaattactagccaaatggta 561

                                                                       
Query: 63  tagtaaacttcttatgttttagacccaaaatttcattagtatttggttttgtttttaaag 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tagtaaacttcttatgttttagacccaaaatttcattagtatttggttttgtttttaaag 501

                                                                       
Query: 123 tacttgccatttaatacacgtacagaaaagtacgcgaatcatttccatgtaactatcatc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tacttgccatttaatacacgtacagaaaagtacgcgaatcatttccatgtaactatcatc 441

                                                                       
Query: 183 agattcataggtctattgtaccagttctacagcccacttcctgtcgcctcttcatcagtt 242
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 agattcataagtctattgtaccagttctacagcccacttcctgtcgcctcttcatcagtt 381

                                                                       
Query: 243 gtccccaaggaactatgtgacatgtgcactcagctgtcattcactcttagtgtctgcctt 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gtccccaaggaactatgtgacatgtgcactcagctgtcattcactcttagtgtctgcctt 321

                                                                       
Query: 303 ctttaattcagttgtgtttgtaggactcatgcaagttattacatatagaattagtaattt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctttaattcagttgtgtttgtaggactcatgcaagttattacatatagaattagtaattt 261

                                                                       
Query: 363 aagttcttccttaaaaactttatttttaaataacagggatgggaaatctgttcatatatg 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aagttcttccttaaaaactttatttttaaataacagggatgggaaatctgttcatatatg 201

                                                                       
Query: 423 tgagttcaggtggcctccgaggccagaagagagttcttgatcccttggagccagaattac 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 tgagttcaggtggcctccgaggccagaagagagttcttgatcccttggagccagaattac 141

                                                                       
Query: 483 aggctgttgtgagtcacctgacgtcattgctggggaccaaagttagttcttctgcaagag 542
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 140 aggctgttgtgagtcacctgacgtcattgctggggacgaaagttagttcttctgcaagag 81

                                                                       
Query: 543 cagtcagcatttttagccactggacaaatatatgaaaaactacagctgcccatcagctta 602
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 80  cagtcagcatttttagccactggacagatatatgaaaaactacagctgcccatcagctta 21

                               
Query: 603 gatggttagaatattaggtc 622
           ||||||||||||||||||||
Sbjct: 20  gatggttagaatattaggtc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no135_f14.g1 MSMg01no135_f14.g1 CHROMAT_FILE:
MSMg01no135_f14.g1 PHD_FILE: MSMg01no135_f14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:27 2005
         (436 letters)



>mm_chr6_17924696_17925531
          Length = 836

 Score =  835 bits (432), Expect = 0.0
 Identities = 435/436 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggcatatcttcaatatgctgatttgatttctttatgtatatatgaagaagtagaactgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggcatatcttcaatatgctgatttgatttctttatgtatatatgaagaagtagaactgc 260

                                                                       
Query: 61  tggaatgtaaatctgtttttaaaatttttaaagaattgccagcttcccaaaaatgtctgt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tggaatgtaaatctggttttaaaatttttaaagaattgccagcttcccaaaaatgtctgt 320

                                                                       
Query: 121 actaatttaaaaatacgaccatgactaagtatttactggatacctctcgaacatcttttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 actaatttaaaaatacgaccatgactaagtatttactggatacctctcgaacatcttttt 380

                                                                       
Query: 181 caagatcattttccacaacactactctgccttgcatagcctttatttctgatgaatctgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagatcattttccacaacactactctgccttgcatagcctttatttctgatgaatctgc 440

                                                                       
Query: 241 tgtgccctgctgggatatggaacaattcaaggactagaatgtttggtgcttgaatctctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtgccctgctgggatatggaacaattcaaggactagaatgtttggtgcttgaatctctt 500

                                                                       
Query: 301 gtccaaaaatttgagtggagtagtgtaactgtagtacttggtgttttgggacgtgtagtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtccaaaaatttgagtggagtagtgtaactgtagtacttggtgttttgggacgtgtagtt 560

                                                                       
Query: 361 atgtagtttgttttgtcttgtgattatggtggcttattttgtgcagtgtttctcagttct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtagtttgttttgtcttgtgattatggtggcttattttgtgcagtgtttctcagttct 620

                           
Query: 421 ggattatgaactcagg 436
           ||||||||||||||||
Sbjct: 621 ggattatgaactcagg 636


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 436
Length of database: 836
Length adjustment: 9
Effective length of query: 427
Effective length of database: 827
Effective search space:   353129
Effective search space used:   353129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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