Query= MSMg01no135_h03.b1 MSMg01no135_h03.b1 CHROMAT_FILE:
MSMg01no135_h03.b1 PHD_FILE: MSMg01no135_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:35 2005
(679 letters)
>mm_chr6_98015342_98016420
Length = 1079
Score = 1187 bits (614), Expect = 0.0
Identities = 656/670 (97%)
Strand = Plus / Plus
Query: 5 gaattcactgattctcatcagctttggtgcacatctgaagggtgtgccagactcaagtgt 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactgattctgatcagctttggtgcacatctgaagggtgtgccagactcaagtgt 264
Query: 65 gatttggtttaacattctcatcctagaatgacaaggtccttgttgccatttttaaatgaa 124
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 265 gatttggcttaacattctcatcctagaatgacaaggtccttgttgccattttaaaatgaa 324
Query: 125 gcagcctctgtcatttaaaagaaaagtgctttttattattgcttttattcttgggtggaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gcagcctctgtcatttaaaagaaaagtgctttttattattgcttttattcttgggtggaa 384
Query: 185 gaaaagaatgaccataatcatttctcatggcaaacaaacaaacaaacaaacaaacacttc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaagaatgaccataatcatttctcatggcaaacaaacaaacaaacaaacaaacacttc 444
Query: 245 gtatttttctacacatttgttttgaatcaggaaaatagagaggcagatggcagcctctgt 304
||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 445 gtatttttctatacatgtgttttgaatcaggaaaatagagaggcagatggcagtctctgt 504
Query: 305 ggctctccactagatttgaagatatttccaatgacctcagaggtgcaaaactctcagctc 364
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 ggctctccactagatttgaagatatttccaatgacatcagaggtgcaaaactctcagctc 564
Query: 365 atctcaaaatctgcccataattttggctctttaaacatattaatcaaatctcccaaataa 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atctcaaaatctgcccataattttggctctttaaacatattaatcaaatctcccaaataa 624
Query: 425 ctccccatcttcaagtgttgaaatcatataacatttctccttattttttcactgtttaca 484
|||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct: 625 ctccccgtcttcaagtgttgaaatcatataacatttctccttatattttctctgtttaca 684
Query: 485 gagatttcttatattgtaactatgcctccttactgctgtttcaaattcacatttgcaggg 544
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct: 685 gagatttcttatattgtaactatgcctccttactgctgtttaaaatttacatttgcaggg 744
Query: 545 cagtattcacaggaaataaagctctgattactgagtctgctggctccttgcttctatatg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 cagtattcacaggaaataaagctctgattactgagtctgctggctccttgcttctatatg 804
Query: 605 atttctttttgtactatagaggtcttccatttgttaactgtttaaaacacccctgcatgc 664
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 805 atttctttttgtactataaaggtcttccatttgtcaactgtttaaaacacccctgcatgc 864
Query: 665 ccctgccttt 674
||||||||||
Sbjct: 865 ccctgccttt 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space: 715161
Effective search space used: 715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_h03.g1 MSMg01no135_h03.g1 CHROMAT_FILE:
MSMg01no135_h03.g1 PHD_FILE: MSMg01no135_h03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:35 2005
(637 letters)
>mm_chr6_98147748_98148783
Length = 1036
Score = 1162 bits (601), Expect = 0.0
Identities = 629/639 (98%), Gaps = 6/639 (0%)
Strand = Plus / Minus
Query: 1 ttatgc-catacccagaaacatataaacataataaacattttttttaaaaattaaagcta 59
|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 890 ttatgcacatacccagaaacatataaacataataaacattttttt--aaaattaaagcta 833
Query: 60 tagaagagaatatatgaatctacaagtgaaattaagactccagtgatatggggtcaagtc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 832 tagaagagaatatatgaatctacaagtgaaattaagactccagtgatatggggtcaagtc 773
Query: 120 cagaattgtcagtttgattattccttacttcaggagtctgaatggttagccatagcagag 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 cagaattgtcagtttgattattccttacttcaggagtctgaatggttagccatagcagag 713
Query: 180 gcacagcctgtttaagccataatcttcaaaagcagaccaggttaaatgattccatgtttg 239
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 712 gcacagcctgtttaagccataatgttcaaaagcagaccaggttaaatgattccatgtttg 653
Query: 240 ttttggtcatcacatagaataatagattctctcactggaacttccatctattgcttagga 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 ttttggtcatcacatagaataatagattctctcactggaacttccatctattgcttagga 593
Query: 300 gaaggcaattggggacagaggttttcttttgagtattggctcttgatacttaaaaccaaa 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 gaaggcaattggggacagaggttttcttttgagtattggctcttgatacttaaaaccaaa 533
Query: 360 ctgttcatactcccaagtcaaacatcaaagtcttctacaagaatagcaaaagctataaaa 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 ctgttcatactcccaagtcaaacatcaaagtcttctacaagaatagcaaaagctataaaa 473
Query: 420 ccttgatttgtgctccaatgtaaatg-tgtattaaatatttagcaaatgtttccaaaaga 478
|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 472 ccttgatttgtgctccaatgtaaatgct-tattaaatatttagcaaatgtttccaaaaga 414
Query: 479 tgtatgttcaacatttgagagtccaacaactcaggtttattattggccacactatgtttt 538
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 413 tgtatgttcaacatttgagagtccaacacctcaggtttattattggccacactatgtttt 354
Query: 539 tcttgataacctcttcccttccatttatcttcagcaagaactagatttttaagacagatt 598
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 353 tcttgataacctcttcccttccatttatcttcagcaagaattagatttttaagacagatt 294
Query: 599 agttttttttttccggaaagagagaaaggaggatttaca 637
|| ||||||||||||||||||||||||||| ||||||||
Sbjct: 293 ag-tttttttttccggaaagagagaaaggatgatttaca 256
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1036
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1026
Effective search space: 643302
Effective search space used: 643302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
