Query= MSMg01no135_m01.b1 MSMg01no135_m01.b1 CHROMAT_FILE:
MSMg01no135_m01.b1 PHD_FILE: MSMg01no135_m01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:57 2005
(676 letters)
>mm_chr6_61296081_61297158
Length = 1078
Score = 1149 bits (594), Expect = 0.0
Identities = 652/672 (97%), Gaps = 6/672 (0%)
Strand = Plus / Minus
Query: 7 attcagaaaacaactctggtgatgactaagaactatttcacatcttgtttcaatatgact 66
||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 1071 attcagaaaacaact-tggtgatgactaagaactatttcacatcttgcttcaatataact 1013
Query: 67 ccaagatgctgaaaccaaatatatatattntggatgaaatatcaagaatatacaagtatc 126
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 1012 ccaagatgctgaaaccaaatatatatatt-tggatgaaatatcaagaatatacaagtatc 954
Query: 127 tcaagtatgtacccttcagttaaaagtgtaggcttccttttttaactaaatatttaaaat 186
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 953 tcaagtatgtgcccttcagttaaaagtgtaggcttccttttttaactaaatatttaaaat 894
Query: 187 ttaatttcataatatagttgatttttcagaatatattttgaagaggaggtttttgatgta 246
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 893 ttaatttcataatatagttgatttttcagaatatattttgaagaggaagtttttgatgta 834
Query: 247 tttctctatggtagacttgaacaaacacatcattcttttgttaaactgcataaat-ttat 305
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 833 tttctctatgatagacttgaacaaacacatcattcttttgttaaactgcataaatatt-t 775
Query: 306 caaaacattaaaatgtggagagtcttgataaaatggcattataaaattgtcaccatttta 365
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 774 caaaacattaaaatgtggagagtcttgataaaatggcattacaaaattgtcaccatttta 715
Query: 366 tcatttatagaagattagaaacaacttacatgctaccaaattaccaggctttattaagaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tcatttatagaagattagaaacaacttacatgctaccaaattaccaggctttattaagaa 655
Query: 426 gctaatctgtttaggtgttttgtggatttatacaaaagctatattgcaaaaataagtgat 485
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 654 gctaatctgtttaggtgttttgtgggtttatacaaaagctatattgcaaaaataagtgat 595
Query: 486 ttaatatttaagcaaacacaaactgtaaacggaacacactggttatcctcttggcatcag 545
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||
Sbjct: 594 ttaatatttaagcaaacacaaactataaacagaacacactggttatcctcttggcgtcag 535
Query: 546 cttgacagggtgttcaaagcttcatcaaagtattaactcttacctgaaaacagggacaat 605
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 534 cttgacagggtgttcaaagcttcatcaaattattaactcttacctgaaaacagggacagt 475
Query: 606 aatctgtatgtccttagacatcttacatttggatttttaggaaccctt--aaaaagtata 663
|| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 474 aacctgtatgtccttagacatcttacatttggatttttaggaacccttaaaaaaagtata 415
Query: 664 ggattaaaaaag 675
||||| ||||||
Sbjct: 414 ggatttaaaaag 403
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 676
Length of database: 1078
Length adjustment: 10
Effective length of query: 666
Effective length of database: 1068
Effective search space: 711288
Effective search space used: 711288
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_m01.g1 MSMg01no135_m01.g1 CHROMAT_FILE:
MSMg01no135_m01.g1 PHD_FILE: MSMg01no135_m01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:57 2005
(445 letters)
>mm_chr6_61218972_61219816
Length = 845
Score = 818 bits (423), Expect = 0.0
Identities = 438/443 (98%)
Strand = Plus / Plus
Query: 1 agagcatttgggaagtagcatatggataaatccatcaaattcagagaatgtttccctttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agagcatttgggaagtagcatatggataaatccatcaaattcagagaatgtttccctttg 260
Query: 61 agctaacctgaagtacgcacactatgtcacccagatcttttcccaacctgtgactgaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agctaacctgaagtacgcacactatgtcacccagatcttttcccaacctgtgactgaaca 320
Query: 121 tgacgtccagaggcctggccatttctgttggtattggatgtggatggattgttttcttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgacgtccagaggcctggccatttctgttggtattggatgtggatggattgttttcttca 380
Query: 181 gatttccatgactctgaggcctgcactgctgtcctgcctaggatgtgatcccattctcta 240
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 381 gatttccatgactctgaggcctgcactgctgtcctgcctaggatgtgaccccattctcta 440
Query: 241 cgatgtctcccctgctgtatgggctgagggctttcctgcacagctctgcttgctccctga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cgatgtctcccctgctgtatgggctgagggctttcctgcacagctctgcttgctccctga 500
Query: 301 ttaccttttacaggattactgtccattaaaccattttttcctcctattctgtcatgtgct 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 501 ttaccttttacagggttactgtccattaaaccattttttcctcctattctgtcatttgct 560
Query: 361 tcttgcaggaccctagcattgtccagttgagagaactcaaatgacagaaggccccttcta 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 tcttgcaggaccctagcattgtccagttgagagaactcacatgacagaaggccccttcta 620
Query: 421 gctctgcagcggtcatatcatga 443
||||||||| |||||||||||||
Sbjct: 621 gctctgcagtggtcatatcatga 643
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 845
Length adjustment: 10
Effective length of query: 435
Effective length of database: 835
Effective search space: 363225
Effective search space used: 363225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
