Query= MSMg01no135_o14.b1 MSMg01no135_o14.b1 CHROMAT_FILE:
MSMg01no135_o14.b1 PHD_FILE: MSMg01no135_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:08 2005
(433 letters)
>mm_chr6_92197969_92198801
Length = 833
Score = 774 bits (400), Expect = 0.0
Identities = 409/412 (99%)
Strand = Plus / Minus
Query: 20 caaaacagcctatcactgggggactaaagagatggctcaacaattaagagcttttactgc 79
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 caaaacagcctatcactgggggactaaagagatggctcaacaattaagagcttttactgc 774
Query: 80 tcttatagatcggtgagttcacttcccagcacccatgtcaggatcaacatctccttgtaa 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 tcttatagatcggtgagttcacttcccagcacccatgtcaggatcaacatctccttgtaa 714
Query: 140 gtcaggctacaggttggcctcagcagagacccacacacacatgtgcacatctccacacac 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 gtcaggctacaggttggcctcagcagagacccacacacacatgtgcacatctccacacac 654
Query: 200 atgcacataacttacaataaaacaaacaaatctttaaacaatccagttacttacaaaatg 259
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gtgcacataacttacaataaaacaaacaaatctttaaacaatccagttacttacaaaatg 594
Query: 260 aacaggtaagtgaatggagccaccaggggtcctggtttctgctcagtgttgatagggact 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aacaggtaagtgaatggagccaccaggggtcctggtttctgctcagtgttgatagggact 534
Query: 320 gtggtgtctgccagacaccaaggaacaagggagaaggctggggaaacagaggtgggttct 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 gtggtgtctgccagacaccaaggaacaagggagaaggctggggaaacagaggtgggttct 474
Query: 380 ggaagccagcactgccctggtgtcactgggaactccctcatgctagtgtggg 431
||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 473 ggaagccagcactaccctggtgtcactgggaactccctcatgctactgtggg 422
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 433
Length of database: 833
Length adjustment: 9
Effective length of query: 424
Effective length of database: 824
Effective search space: 349376
Effective search space used: 349376
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no135_o14.g1 MSMg01no135_o14.g1 CHROMAT_FILE:
MSMg01no135_o14.g1 PHD_FILE: MSMg01no135_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:08 2005
(285 letters)
>mm_chr6_92044129_92044811
Length = 683
Score = 458 bits (237), Expect = e-133
Identities = 271/287 (94%), Gaps = 10/287 (3%)
Strand = Plus / Plus
Query: 1 taggacgttttgagggttttttttgtttagttctgttgttttgtttgagaagttgtctag 60
|||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 taggactttttgagggttttttt-gtttagttctgttgttttgtttgagaagttgtctag 259
Query: 61 gttggccttttaaccctggcctctagtgatttcctgtgttagcctctgagcagctgaggc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 260 gttggccttttaaccctggcctctagtgatttcctgtgttagcctctgagcagctgagac 319
Query: 121 tttgggctggtctgtgctaccatgcctaggtggagaagtttttaataccaaccgacctgg 180
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 320 tttaggctggtctgtgctaccatgcctaggtggagaagtttttaataccaagcgacctgg 379
Query: 181 tatgatagaaggatcttgggtcatggagtcagaaaaacttggttccagaatcttgattaa 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 380 tatgatagaaggatcttgggtcatggagtcagaaaaacttggtcccagaatcttgattaa 439
Query: 241 ----ttttttctttttgaggttatacatttgtaagctgggaaagagg 283
| |||||||||||||||||||||||||||||| ||||||
Sbjct: 440 gcagt-----ctttttgaggttatacatttgtaagctggggaagagg 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 683
Length adjustment: 9
Effective length of query: 276
Effective length of database: 674
Effective search space: 186024
Effective search space used: 186024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
