Query= MSMg01no136_m18.b1 MSMg01no136_m18.b1 CHROMAT_FILE:
MSMg01no136_m18.b1 PHD_FILE: MSMg01no136_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:17 2005
(633 letters)
>mm_chr6_23044826_23045859
Length = 1034
Score = 1141 bits (590), Expect = 0.0
Identities = 620/630 (98%), Gaps = 1/630 (0%)
Strand = Plus / Minus
Query: 5 gaattccatattct-accttcaaactgcctttatagttctgtaagagagtttctcatagg 63
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 834 gaattccatattctaacattcaaactgcctttatagttctgtaagagagtttctcatagg 775
Query: 64 gaagcatcgtatttgcctgttatttataattctgtttttccttgttacctggatgattcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 774 gaagcatcgtatttgcctgttatttataattctgtttttccttgttacctggatgattcc 715
Query: 124 tcactgtgagtgtaatgatgtgtcaaccagtccgtcatttcctcagtctgtgtgcatcag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 tcactgtgagtgtaatgatgtgtcaaccagtccgtcatttcctcagtctgtgtgcatcag 655
Query: 184 agctcctggggcagctgggctgattggctggcattcctggaactgccttctttcattccc 243
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 654 agctcctggggcagctgggctgatgggctgccattcctggaactgccttctttcattccc 595
Query: 244 tagtgtattcttatggccggaatctgatcatggagatcttacctaaaaagggaatttact 303
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 tagtgtattcttatggccagaatctgatcatggagatcttacctaaaaagggaatttact 535
Query: 304 ttagtcttacattcttttcattgcttagcacagtgactattaacctggaatttggggtta 363
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 534 ttagttttacattcttttcattgcttagcacagtgactattaatctggaatttggggtta 475
Query: 364 ggggtaccgctgatgtggactgaattggaatctaggagtgttttaaagattttatattgg 423
||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 ggggtaccgttgatatggactgaattggaatctaggagtgttttaaagattttatattgg 415
Query: 424 tacatcaaaataatgttttatttatacaaattatataaggtactactggaaagaatatct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tacatcaaaataatgttttatttatacaaattatataaggtactactggaaagaatatct 355
Query: 484 aataagcaggtaatggtggttctttcagttaaatggatgggaattgtagttgaaggagat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 aataagcaggtaatggtggttctttcagttaaatggatgggaattgtagttgaaggagat 295
Query: 544 ctcctatcattagtgtgcatgtgttactgggtcaagatggatgggaacatttttatatta 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 ctcctatcattagtgtgcatgtgttactgggtcaagatggatgggaacatttttatatta 235
Query: 604 gcatttattcacttattacaaatgaaaaag 633
| ||||||||||||||||||||||||||||
Sbjct: 234 gtatttattcacttattacaaatgaaaaag 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1034
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1024
Effective search space: 637952
Effective search space used: 637952
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_m18.g1 MSMg01no136_m18.g1 CHROMAT_FILE:
MSMg01no136_m18.g1 PHD_FILE: MSMg01no136_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:17 2005
(622 letters)
>mm_chr6_22927093_22928113
Length = 1021
Score = 1164 bits (602), Expect = 0.0
Identities = 617/622 (99%), Gaps = 2/622 (0%)
Strand = Plus / Plus
Query: 1 ccttcatcagaacgtcactgctctgcatttctgctttgatgtaaggaagccattccttag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccttcatcagaacgtcactgctctgcatttctgctttgatgtaaggaagccattccttag 260
Query: 61 aaaggcacgtcatctaggcatcataaagtggacatggtagattctaagaatccttggatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggcacgtcatctaggcatcataaagtggacatggtagattctaagaatccttggatt 320
Query: 121 tagtagagccatctgattgggaaggctttagtagaggctgccttctaaacaataagtact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtagagccatctgattgggaaggctttagtagaggctgccttctaaacaataagtact 380
Query: 181 acagacaacaattcaaacctgtatagagtagaagttcacatttattcccagcccctcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagacaacaattcaaacctgtatagagtagaagttcacatttattcccagcccctcaag 440
Query: 241 taccatatgctttcttgttcttttttttttaattttttaacaatttttattagatatttt 300
|||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 taccatatgctttcttgttc-tttttttttatttttttaacaatttttattagatatttt 499
Query: 301 cttcatttacatttcaaatgctatcccaaaagtcccctataccctcctcccaccatgctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttcatttacatttcaaatgctatcccaaaagtcccctataccctcctcccaccatgctc 559
Query: 361 cccaacctacccactcccacttcctggccctggcatcaccctgtactggggcatataatc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 cccaacctacccactcccacttcctggccctggcatcaccctgtactggggcatataatc 619
Query: 421 tttgcaagaccaagggcgactcctctcattgatggccaagtaggccaacttctgctacat 480
||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 620 tttgcaagaccaagggccactcctctcattgatggccgagtaggccaacttctgctacat 679
Query: 481 atgcaactagagacatgagttcaggggggtaatggttagttcatattgttgttcctccta 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 atgcaactagagacatgagttcaggggggtaatggttagttcatattgttgttcctccta 739
Query: 541 tagggttacagaccccttcagctccttaggtacctactttctctagctcctccactgggg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tagggttacagaccccttcagctccttaggtacctactttctctagctcctccactgggg 799
Query: 601 gggccctgtgctccatccaata 622
|| |||||||||||||||||||
Sbjct: 800 gg-ccctgtgctccatccaata 820
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1021
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1011
Effective search space: 618732
Effective search space used: 618732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
