Query= MSMg01no137_a16.b1 MSMg01no137_a16.b1 CHROMAT_FILE:
MSMg01no137_a16.b1 PHD_FILE: MSMg01no137_a16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:36 2005
(611 letters)
>mm_chr6_141485264_141486275
Length = 1012
Score = 1054 bits (545), Expect = 0.0
Identities = 578/589 (98%), Gaps = 3/589 (0%)
Strand = Plus / Minus
Query: 3 gaattcagctcttt-tactttag-atattacagaagcaatgcctgagagtacttcttcgg 60
|||||||||||||| | ||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 588 gaattcagctctttaaagttt-gcatattacagaagcaatgcctgagagtacttcttcgg 530
Query: 61 catttgactggtgtaaggactaggctggtcatgtccttctgtttgtgaggctggcttaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 catttgactggtgtaaggactaggctggtcatgtccttctgtttgtgaggctggcttaca 470
Query: 121 ttttatagcaatacttttgcagcctatatactttttaccaaacccttacaataaggaact 180
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 469 ttttatagcaatacttttgcagcctatgtactttttaccaaacccttacaataaggaact 410
Query: 181 ggtttgaagggtgttacttgttacattaatgaataatgccatttcaccaccaccctatct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 ggtttgaagggtgttacttgttacattaatgaataatgccatttcaccaccaccctatct 350
Query: 241 ccacaagattacgtttcctgtgcgtgctataatggcagcctttctgagttcccaggagag 300
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 349 ccacaagattacgtttcctgtgcctgctataatggtagcctttctgagttcccaggagag 290
Query: 301 atacatgggagagatgcatgattcaaaacatacaaaaaataaattggagcatccgagaag 360
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 289 atacatgggagagatgcatgattcaaaacatacaaaaaatgaattggagcatccgagaag 230
Query: 361 agggctctggggcaaagtgctggctatgttcagatcctcaacaccaacatataagctggt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 agggctctggggcaaagtgctggctatgttcagatcctcaacaccaacatataagctggt 170
Query: 421 gagaggttggtgcctgtaacctcagcactagccttgaggaggaactgtggagattggaag 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 169 gagaggttggtgcctgtaacctcagcactagccttgaggaggaagtgtggagattggaag 110
Query: 481 agtccaaaggctttctggccagctgacctggatgtaaaggtaagcaacaggttcagtgag 540
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 agtccaaaggcttcctggccagctgacctggatgtaaaggtaagcaacaggttcagtgag 50
Query: 541 agaccctacctaaaaagataaagtggatggcagtaaaggaagatgctga 589
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 agaccctacctaaaaagataaagtggatggcagtaaaggaagatgctga 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1012
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1002
Effective search space: 602202
Effective search space used: 602202
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_a16.g1 MSMg01no137_a16.g1 CHROMAT_FILE:
MSMg01no137_a16.g1 PHD_FILE: MSMg01no137_a16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:36 2005
(509 letters)
>mm_chr6_141344898_141345806
Length = 909
Score = 984 bits (509), Expect = 0.0
Identities = 509/509 (100%)
Strand = Plus / Plus
Query: 1 aggaccctgtatctctctgtgagaggtaaaggtctccacgaatttcagtcttcagtgggc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aggaccctgtatctctctgtgagaggtaaaggtctccacgaatttcagtcttcagtgggc 260
Query: 61 tatgttcatatttggaatgttttctgaagacagaaagttcagttgttaaaatacttgcca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tatgttcatatttggaatgttttctgaagacagaaagttcagttgttaaaatacttgcca 320
Query: 121 cacaggacctgggctcaatccccagaacccacatacaaaagccaagtgtggtagtacatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cacaggacctgggctcaatccccagaacccacatacaaaagccaagtgtggtagtacatg 380
Query: 181 tttataattttggtgctggagaactgaagccgggggaccctggagctggctgattataca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttataattttggtgctggagaactgaagccgggggaccctggagctggctgattataca 440
Query: 241 gcataggctatctggtgagtttcaggtcagtgagagaagccatctaaaaaacaaaaatgc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcataggctatctggtgagtttcaggtcagtgagagaagccatctaaaaaacaaaaatgc 500
Query: 301 tggatgataactaaagatcaacattcaaagctaatctctgtctttaaacatcaccatgta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggatgataactaaagatcaacattcaaagctaatctctgtctttaaacatcaccatgta 560
Query: 361 cttacagagaccccccccacacacacacacagcagactttttaaaagtaattgaaagaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cttacagagaccccccccacacacacacacagcagactttttaaaagtaattgaaagaaa 620
Query: 421 ctcccatttctttccttttttccccctttgttaatttttctgatagcataagagggaaag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctcccatttctttccttttttccccctttgttaatttttctgatagcataagagggaaag 680
Query: 481 acaatattgccctgggatattcaaaaagg 509
|||||||||||||||||||||||||||||
Sbjct: 681 acaatattgccctgggatattcaaaaagg 709
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
