BAC Information

Click to search

BAC

Clone NameMSMg01-137A20
Chromosome6 (Build37)
Map Location 24,551,559 - 24,552,054
singlet/doubletsinglet
Overlap geneLmod2
Upstream geneCadps2, Rnf133, Rnf148, Tas2r118, LOC100041082, Slc13a1, LOC100041094, Iqub, Ndufa5, Asb15, EG626715
Downstream geneWasl, 4932701A20Rik, Hyal4, Spam1, Hyal5, 6332401O19Rik, LOC384358
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137A20.T7 (MSMg01no137_a20.b1)MSMg01-137A20.TJ (MSMg01no137_a20.g1)
ACCAG343083AG343084
length720716
length of high quality
(start - end)
591 (49 - 639)564 (74 - 637)
definitionCHROMAT_FILE: MSMg01no137_a20.b1 PHD_FILE: MSMg01no137_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:37 2005CHROMAT_FILE: MSMg01no137_a20.g1 PHD_FILE: MSMg01no137_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:53:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGAAGGCGCG
GAATTCTTTGTTTATTCCTCCACTGCATTTTTTTAATAGGGCTATTTGGT
TCTCTGGAGTCTAACTTATTGAGTTCTTTGTATATATTGGATATTAGCCC
TCTATCGGATGTAGGGTTGGTAAAGATCTTTTCCCAATCTGTTGATTGCC
ATTTTGTCCTATTGACAGTGTCCTTTACCTTACAGAAGCTGAGGTCTCAT
TTGTCAATTCTTGATCTTAAAGCATAAGCTATTGGTGTTCTGTTCAAGAA
AATTTTCCCTGTTCTGCATTCTTGATGTTCTTCCCCACTTTCTTTTCTAT
TAGTTTCAGTGTATCCAGTTTTATGTGAAGGTCCTTGATTCACTTGGACT
TGAGCTTTGTACAAGGAGATAAGAATGGATCAATTTGCATGCTACATGCT
AACCACCTGCTGAGCCAGCACCATTTGTTGAAAATGCTGGCTTTTTTCCA
CTGATGGTTTTAGTTCCTTTGTCAAAAATCAAGTTACCAGGGGTGTGTAG
GTTCATTTCTGGATCTTCAATTCTATTCCATTAATCTCCCTGACTGTCAC
TGTACCAATACCATGCAGTTTTTATCACAATTGCTCTGTAGTACAGCTTG
AGGTCAGGGATGGTGATTCCCCAAGAAGTTCTTTTATTGTTGAGAATAGT
TTTCACTGTCCTGTGTTTTC
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCCTCTACACTGGAAGCTCTTTTTT
TTTTTTTTAACTTCTGGGAGTTGGGAGAGGTGTTGCCTGTGGCATGTGGA
TGGATGGGACATTGGAAAACATTATGTTGGGTTCCAGGCTTGTCTGCCCA
GTTGCTGTCAGAGAATAGCCTCCAGTTAGCCACACTTGTCTGGAGTGGCA
GGCACCAAGTGATGGCCTTGGAAAGGGTCAGCCTCTCCTGAGATGACCTG
TCCAGTGTCAGTTTACTTGATGTATTAGGAGAAGAAGGGTGTGTGTGTGT
GTCTGTCTGTCTGTCTGTCTGTATGTCTGTCTGTCTGTCTGTCTGTCAAA
GGGTTGGTGGAGGGACAGGAGTCATAGCTCAATGATACAAAACACCCTGC
AAAGAAGTAAATGATCAGCTAGAGAGAGTTTCTGACACCCCACCCCAGAC
CCCTTTGCTTGTGTAAGTGGAGTCTCAATCAGCTACCTAAGGGTGTCTAC
TGGCATGTGTCAAAAATGCATCGTATTTGGAAAAATCCAAAGCCTTTCCT
AAAATCATGAAATCTCATCTCCTTTAGTATTTAACCATCTTTAGTCTCTA
ACTGCAAAATACTTCTGATAATCGTGTCAGCTCTCTAGCAATGTAACCTT
TTATGTAATATCCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_a20.g1 MSMg01no137_a20.g1 CHROMAT_FILE:
MSMg01no137_a20.g1 PHD_FILE: MSMg01no137_a20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:37 2005
         (564 letters)



>mm_chr6_24551559_24552522
          Length = 964

 Score =  832 bits (430), Expect = 0.0
 Identities = 476/496 (95%), Gaps = 9/496 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctctacactggaagctc-------ttttttttttttttaacttctgggagttggga 53
           |||||||||||||||||||||       ||||||||||||||||||||||||||||||| 
Sbjct: 496 tttcctctacactggaagctctttttttttttttttttttttaacttctgggagttgggg 437

                                                                       
Query: 54  gaggtgttgcctgtggcatgtggatggatgggacattggaaaacattatgttgggttcca 113
           |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 436 gaggtgttgcctgtggcatgtggatggatgggactttggaaaacattatgttcggttcca 377

                                                                       
Query: 114 ggcttgtctgcccagttgctgtcagagaatagcctccagttagccacacttgtctggagt 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 ggcttgtctgcccagttgctgtcagagaatagcctccagttagccacacttgtctggagt 317

                                                                       
Query: 174 ggcaggcaccaagtgatggccttggaaagggtcagcctctcctgagatgacctgtccagt 233
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ggcaggcaccaagtgatggccttggaaagggtcagcctctcctgagatgacctgtccagt 257

                                                                       
Query: 234 gtcagtttacttgatgtattaggagaagaagggtgtgtgtgtgtgtctgtctgtctgt-- 291
           |||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||  
Sbjct: 256 gtcagtttacttgatgtattaggagaagaagggtgtgtgtgtgtgtgtgtgtgtgtgtgt 197

                                                                       
Query: 292 ctgtctgtatgtctgtctgtctgtctgtctgtcaaagggttggtggagggacaggagtca 351
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 ctgtctgtctgtctgtctgtctgtctgtctgtcaaagggttggtggagggacaggagtca 137

                                                                       
Query: 352 tagctcaatgatacaaaacaccctgcaaagaagtaaatgatcagctagagagagtttctg 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 tagctcaatgatacaaaacaccctgcaaagaagtaaatgatcagctagagagagtttctg 77

                                                                       
Query: 412 acaccccaccccagacccctttgcttgtgtaagtggagtctcaatcagctacctaagggt 471
           ||||||||||| ||| |||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 76  acaccccaccctagatccctttgcttgtataagtggagtcccaatcagctacctaagggt 17

                           
Query: 472 gtctactggcatgtgt 487
           ||||||||||||||||
Sbjct: 16  gtctactggcatgtgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 964
Length adjustment: 10
Effective length of query: 554
Effective length of database: 954
Effective search space:   528516
Effective search space used:   528516
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)