CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATCTGTCCTCCTTGAGTCATTGAACATTAATCATAAACAACAAT
TATACCATAAATATACTAAACATCTCTGTCATTTAGAAAATTACCTTAGG
ACCAGGTGAGCCTTGTCCTGGGGGTCCTTGAGGACCAGGTGGACCAGATG
GACCTTGGATCCCCTTCAGAATAAAAGTTTTAAATGTTAGTGAAATTAAG
ACATGGAGAACAGTCTTGTGTCTTTTAGAGTGAAAGTTTAGCTCCCCATA
ACAAATTGACTGGACAGCTGGAAGCTTCTAGTCAAATCCCATTGCTTAAA
CCCAATGCATATTCTTTCCTTCTATGATAGTAAGAGAAATTTCAGTTAAC
CCACATGTATACTTGGAATAAATCTCATGCTTCCAGTAAACAACTTTAAT
CCCAGGATTTGGGAGGCAGTAAGAGGACAATCTCTATGAGTTTGAGGGCA
TCCTGTTCTATATAGTGAATTCCAGAGCAGTTAACGCCTACATAGTAAGA
CCTTGTCTCAAAAAAAAAAAGTACATGCTGCCTCATAGAGGTCAGATGCG
GTTAAATGGACCTGGCTGTGGCTGTTAGGATGTGGGTGTGGAATGATGTA
TGCACGTTTCCATTCATTCTGAAGGTAGAAGGACTCTGTCCTCTCTGTCC
TCCTCTTCTTCCTGTGTATGGAGT

ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGAACTTTTCAGCTGGGGAACGAGAGTACCAG
TGAGTACAGCTTTACGAGGTAAGTCTGGTCTTGAACTTTCTAAGGAAATT
CAAGACAGTCTATCAGAAGTAAAGTGGAATATGTTTGGCCTTGAATTTTT
TCTGGTGTTAGGAGCCCTTTTGTTCCTTTTCACATGTTATCAAGTGATTA
AGATAGGGCTGAAAATTCTAGAGGAAATTCAGGACAAGCTATCAGAAGTA
AAGCGGGGAGAGAGAGTAGGAACAAAGAGGAAGTATACAGGCCTTTCCAA
GGGTCTTGAACCCGAGGAAAAGTTAAGGTTAGGTAGGAATACCTGGAGAG
AGATTAGAAGAAAAAGAGGAAAAAGGGAAAAGAAGAAAGATCAATTAGCG
GAGGTCTCTAGGAAAAGGAGCCTGTGCTCATCGCTGGATGGGCTCGGGGA
GCCAGCTCTTAGTAGCTCTGAAGCAGGTGAAGAATCCTCCTCTGAGGAAA
CAGACTGGGAGGAAGAAGCAGCTCATTATGAGAAAAAAGGGTACCAGCCA
GGTAAAGTGCTAGCTAATCAGTTAAGGAAGCCAAAAGCGGCTGGCGAAGG
CCAGTTTGCTGATTGGCCTCAGGGCAGTCGGCTTCAAGGTCCGCCCTATG
CGGAGT

Query= MSMg01no137_p04.b1 MSMg01no137_p04.b1 CHROMAT_FILE:
MSMg01no137_p04.b1 PHD_FILE: MSMg01no137_p04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:49 2005
         (645 letters)



>mm_chr6_8042813_8043857
          Length = 1045

 Score = 1106 bits (572), Expect = 0.0
 Identities = 629/668 (94%), Gaps = 32/668 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtcattgaacattaatcataaacaacaattataccataaatatactaaacatctctgtca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gtcattgaacattaatcataaacaacaattataccataaatatactaaacatctctgtca 237

                                                                       
Query: 61  tttagaaaattaccttaggaccaggtgagccttgtcctgggggtccttgaggaccaggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tttagaaaattaccttaggaccaggtgagccttgtcctgggggtccttgaggaccaggtg 297

                                                                       
Query: 121 gaccagatggaccttggatccccttcagaataaaagttttaaatgttagtgaaattaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 gaccagatggaccttggatccccttcagaataaaagttttaaatgttagtgaaattaaga 357

                                                                       
Query: 181 catggagaacagtcttgtgtcttttagagtgaaagtttagctccccataacaaattgact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 catggagaacagtcttgtgtcttttagagtgaaagtttagctccccataacaaattgact 417

                                                                       
Query: 241 ggacagctggaagcttctagtcaaatcccattgcttaaacccaatgcatattctttcctt 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct: 418 ggacagctggaagcttctagtcaaatcccattgcttaaacccaatgtatatcctttcctt 477

                                                                       
Query: 301 ctatgatagtaagagaaatttcagttaacccacatgtatacttggaataaatctcatgct 360
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctatgatagtaagagaaattttagttaacccacatgtatacttggaataaatctcatgct 537

                                                                       
Query: 361 tccagtaaacaactttaatcccaggatttgggaggcagtaagaggacaatctctatgagt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tccagtaaacaactttaatcccaggatttgggaggcagtaagaggacaatctctatgagt 597

                                                                       
Query: 421 ttgagggcatcctgttctatatagtgaattccagagcagttaacgcctacatagtaagac 480
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 598 ttgagggcatcctgttctatatagtgaattccagagcagtcaacgcctacatagtaagac 657

                                                                       
Query: 481 cttgtctcaaaaaaaaaaa-----------------------gtacatgctgcctcatag 517
           |||||||||||||||||||                       ||||||||||||||||||
Sbjct: 658 cttgtctcaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcaaagtacatgctgcctcatag 717

                                                                       
Query: 518 aggtcagatgcggttaaatggacctggctgtggctgttaggatgtgggtgtggaatgatg 577
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 aggtcagatgtggttaaatggacctggctgtggctgttaggatgtgggtgtggaatgatg 777

                                                                       
Query: 578 tatgcacgtttccattcattctgaaggtagaaggactctgtcctctctgtcctcctcttc 637
           |||||||||| |||||||||||||||| |||||||||||||||||         ||||||
Sbjct: 778 tatgcacgttcccattcattctgaaggaagaaggactctgtcctc---------ctcttc 828

                   
Query: 638 ttcctgtg 645
           ||||||||
Sbjct: 829 ttcctgtg 836


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)