BAC Information

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BAC

Clone NameMSMg01-137P10
Chromosome6 (Build37)
Map Location 121,355,188 - 121,355,850
singlet/doubletsinglet
Overlap geneIqsec3
Upstream geneJarid1a, Il17ra, Cecr6, Cecr5, 1700072O05Rik, Cecr2, Slc25a18, Atp6v1e1, Bcl2l13, Bid, Mical3, LOC100043793, Minpp1-ps, Pex26, Tuba8, Usp18, Slc6a13, Slc6a12
Downstream geneLOC100043486, A2m, EG640530, Mug1, Mug4, Mug2, Mug-ps1, Klrg1, LOC625931, M6pr, Phc1, 1700063H04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137P10.T7 (MSMg01no137_p10.b1)MSMg01-137P10.TJ (MSMg01no137_p10.g1)
ACCAG343749AG343750
length731727
length of high quality
(start - end)
39 (71 - 109)663 (65 - 727)
definitionCHROMAT_FILE: MSMg01no137_p10.b1 PHD_FILE: MSMg01no137_p10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:50 2005CHROMAT_FILE: MSMg01no137_p10.g1 PHD_FILE: MSMg01no137_p10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCCGCGGAA
TTCCTCAGGGTTTCTTGATGTTGTTGTTGTGTTGTTATTGTTGTTGTTTG
GGGTTAAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTCCCTCCCCCATCTGCATCAGCCCACCCTTTTTTGGTT
TTACCGTTATCCCCATAATCTTGTGATAACGCATCAATCACCACGCCACC
ATTTCCCTTTCCCACTGTTCCCATTTTGTTTTAATXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCCCCCAAATCTATGCTC
ACCCCCCTATTGTCCCACCCCTACACCATACTCCGTATCCCTGTAATCCC
CCCTGTTATCTCCCCCGCTTTTTTTCCCGATTTTATCCCTCCTCTTATCA
GATTTTGTCCCGCTTTTTTTTCTCCCTCCCG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXCTTGCTAGCCATAAAGGCCACAGCCTTCCAGTCTGT
TGGATATTGACAGACAATCTGTCTTCATCTAAAAATGTCCCGAGAAGAAC
AAGTCTGTTACATTCTGGCCAACAGATGAATGCTGGTGGAAATGAAGTCA
TGAAAATCTGACTCCAACATCAAATGTTAATTAGTATGTACCAGAACTTC
ACACAGGACCCAAGACTAGTGGAAAGAAGAACCATGCCAGAAACTTCCTG
CTGGCGACGTTATCCTAAAGCTGCCCTTAGAGTATTCTTGCTGAAATGAC
AGGCATGGGTGCCCTCCTCACACATGCGATTCACATCGGAAAGAATCATC
CACGCTAGAAGAGAGACTGCTCACAGCTGGCCCGGAACATTCTCCCATCC
GCTGGCCTTCAAGCCCGCTGAAGCGGACACTTCAGGAAGGAAATAGAGCA
GAGCTAAATTCCCAGCCACATGAAAACTGTGGGTGGGCAGAGCAGTGGGC
ACAGCTAGCCCTAAAAGATCCTGCTTGGCTCCCATATATATATGCCTGAA
CTTGCAAGGTGTCTCTTTTGTACATCCAGAAGGGATGTCTTCAGGATACA
GGGTGGTCCCCGGAACAAGCTAGTCCCATCCTGTTCTTTCCCATGTCTCC
ATGGCAAATTCTAGCAAGTTCTCATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_p10.g1 MSMg01no137_p10.g1 CHROMAT_FILE:
MSMg01no137_p10.g1 PHD_FILE: MSMg01no137_p10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:50 2005
         (663 letters)



>mm_chr6_121354988_121356050
          Length = 1063

 Score = 1259 bits (651), Expect = 0.0
 Identities = 660/663 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgctagccataaaggccacagccttccagtctgttggatattgacagacaatctgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgctagccataaaggccacagccttccagtctgttggatattgacagacaatctgtct 260

                                                                       
Query: 61  tcatctaaaaatgtcccgagaagaacaagtctgttacattctggccaacagatgaatgct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatctaaaaatgtcccgagaagaacaagtctgttacattctggccaacagatgaatgct 320

                                                                       
Query: 121 ggtggaaatgaagtcatgaaaatctgactccaacatcaaatgttaattagtatgtaccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtggaaatgaagtcatgaaaatctgactccaacatcaaatgttaattagtatgtaccag 380

                                                                       
Query: 181 aacttcacacaggacccaagactagtggaaagaagaaccatgccagaaacttcctgctgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aacttcacacaggacccaagactagtggaaagaagaaccatgccagaaacttcctgctgg 440

                                                                       
Query: 241 cgacgttatcctaaagctgcccttagagtattcttgctgaaatgacaggcatgggtgccc 300
           || ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 cggcgttatcctaaagctgcccttagagcattcttgctgaaatgacaggcatgggtgccc 500

                                                                       
Query: 301 tcctcacacatgcgattcacatcggaaagaatcatccacgctagaagagagactgctcac 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tcctcacacatgcgattcacatcggaaagaatcatccacgctagaagagagactgctcac 560

                                                                       
Query: 361 agctggcccggaacattctcccatccgctggccttcaagcccgctgaagcggacacttca 420
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agctggcccagaacattctcccatccgctggccttcaagcccgctgaagcggacacttca 620

                                                                       
Query: 421 ggaaggaaatagagcagagctaaattcccagccacatgaaaactgtgggtgggcagagca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ggaaggaaatagagcagagctaaattcccagccacatgaaaactgtgggtgggcagagca 680

                                                                       
Query: 481 gtgggcacagctagccctaaaagatcctgcttggctcccatatatatatgcctgaacttg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgggcacagctagccctaaaagatcctgcttggctcccatatatatatgcctgaacttg 740

                                                                       
Query: 541 caaggtgtctcttttgtacatccagaagggatgtcttcaggatacagggtggtccccgga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 caaggtgtctcttttgtacatccagaagggatgtcttcaggatacagggtggtccccgga 800

                                                                       
Query: 601 acaagctagtcccatcctgttctttcccatgtctccatggcaaattctagcaagttctca 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 acaagctagtcccatcctgttctttcccatgtctccatggcaaattctagcaagttctca 860

              
Query: 661 tct 663
           |||
Sbjct: 861 tct 863


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1063
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1053
Effective search space:   687609
Effective search space used:   687609
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)