BAC Information

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BAC

Clone NameMSMg01-138A09
Chromosome6 (Build37)
Map Location 18,766,916 - 18,767,441
singlet/doubletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2
Downstream geneEG545829, Lsm8, Ankrd7, LOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138A09.T7 (MSMg01no138_a09.b1)MSMg01-138A09.TJ (MSMg01no138_a09.g1)
ACCAG343794AG343795
length705696
length of high quality
(start - end)		527 (50 - 576)602 (78 - 679)
definitionCHROMAT_FILE: MSMg01no138_a09.b1 PHD_FILE: MSMg01no138_a09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:55 2005CHROMAT_FILE: MSMg01no138_a09.g1 PHD_FILE: MSMg01no138_a09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:55 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTTGAGACGGTTTACTTCAAAGAGCTGAAGCAGGATGAAG
CAAAAGGAGTAAAACTTAAAAAGAAAAAAAAACACGAGAGAAATAATAGC
AGTTAGTGTGCTGAAGTTCTCCTCTAAATACTTTCGTTTTGTCAAGGAAC
AGGCAAAGAAGACAACTTGCTCTAAGAGTGATTTATGGCTGAAGGAGGTA
AGGATTAGAAAGCAGGTAGTTAAGAAAGTATGGAGCCAATCAGGTCACAC
CCTTTGGATGAAGGGTATCAGCATCATTACATCTGAGTAACTACAGAAGG
ACAAAATGGTCATCAGGGCAGGAGACAGCAGACAACAGTCATCATTGTCA
TCACTTTGAGCTGAATTCTCTTCAGCTGTGTGGGTGCAGGACCAGCAGGG
AGTTGGATTTAACTAGGTTGTATCTGACTAATCACAGAAGCAATCTCTAC
TCCCCACACCCTATTCACCCACTCATGGAAAAATCAGCTATCTCTTTCCT
AGCATACAGGAAGGTGGAGATGTTGATGAATCTGACTTGGTTTTCCTTAT
CTCTTGCAAAAGTTTTGTTGTGTGTTATTCCCTCTTCTCTTGGTTGGTCA
TTTTCATCATCTTGTCGTACTTTTTGTGTCCCGTTTGTCTTCTTTCTTTG
TATCT

NNNNCCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTATATATATATTGGATATTAG
TCCCCTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTG
GACTTTTTGTCTTATTGACAGTGTCTTTCGCCTTGCAGAAGCTTTGCAGT
TTCATGAGGTCACCTGAGTTTTTGATCTTAGCCATTCTGACTTGTGTGAG
GTGGAATCTTAGGGTTGTTTTGATTTGCATTTCCCTGATGAATAAGGATG
TTGAACATTTTTTCAGGTGCTTCTCGGCCTTTTGGTATTCCTCAGGTGAG
AATTCTTTGTTTAGCTCTGAGCCCCATTTTTAATGGGGTTATTTGAATTT
CTGTAGTCCACCTTCTTGAGCTCTTTGTATATAATGAATATTAGTCCCCT
ATCAGAATTAGGATTGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTT
TTGTCTTATTGATGGTGTCTTTTGCCTTATAGAAGCTTTGAAATTTTATG
ACGTCCTATTTGTTGATTCTTGATCTTACAGCAGAAGCCATTGCTGTTCT
GTTCAGGAATTTTTCCACTGTGCCCAAATCCTCAAGGCTTTTCCCCACTT
TCTCCTCTATAAGTTTTAATGTCTCTGGTTTTATGTGGAGTTCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_a09.b1 MSMg01no138_a09.b1 CHROMAT_FILE:
MSMg01no138_a09.b1 PHD_FILE: MSMg01no138_a09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:55 2005
         (527 letters)



>mm_chr6_18766716_18767642
          Length = 927

 Score =  920 bits (476), Expect = 0.0
 Identities = 514/528 (97%), Gaps = 6/528 (1%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttttgagacgg-tttacttcaaagagctgaagcaggatgaagcaaaaggagta 62
           ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaattcttttgaga-ggttttacttcaaagagctgaagcaggatgaagcaaaaggagta 259

                                                                       
Query: 63  aaacttaaaaag---aaaaaaaaacacgagagaaataatagcagttagtgtgctgaagtt 119
           ||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 aaacttaaaaagaaaaaaaaaaaacacgagagaaataatagcagttagtgtgctgaagtt 319

                                                                       
Query: 120 ctcctctaaatactttcgttttgtcaaggaacaggcaaagaagacaacttgctctaagag 179
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctcctctaaatacttttgttttgtcaaggaacaggcaaagaagacaacttgctctaagag 379

                                                                       
Query: 180 tgatttatggctgaaggaggtaaggattagaaagcaggtagttaagaaagtatggagcca 239
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgatttatggctgaaggaggtacggattagaaagcaggtagttaagaaagtatggagcca 439

                                                                       
Query: 240 atcaggtcacaccctttggatgaagggtatcagcatcattacatctgagtaactacagaa 299
           ||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 440 atcaggtcagacccttcggatgaagggtatcagcatcattacacctgagtaactacagaa 499

                                                                       
Query: 300 ggacaaaatggtcatcagggcaggagacagcagacaacagtcatcattgtcatcactttg 359
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 500 ggacaaaatggtcatcagggcaggagacagcagacagcagtcatcattgtcatcactttg 559

                                                                       
Query: 360 agctgaattctcttcagctgtgtgggtgcaggaccagcagggagttggatttaactaggt 419
           ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 560 agccgaattctcttcagctgtgtgggtgcaggaccagcagggagttg-atttaactaggt 618

                                                                       
Query: 420 tgtatctgactaatcacagaagcaatctctactccccacaccctattcacccactcatgg 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgtatctgactaatcacagaagcaatctctactccccacaccctattcacccactcatgg 678

                                                           
Query: 480 aaaaatcagctatctctttcctagcatacaggaaggtggagatgttga 527
           |||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 679 aaaaatcagctatctctttcctagtatacaggaaggtggagatgttga 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 927
Length adjustment: 10
Effective length of query: 517
Effective length of database: 917
Effective search space:   474089
Effective search space used:   474089
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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