BAC Information

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BAC

Clone NameMSMg01-138E23
Chromosome6 (Build37)
Map Location 41,890,078 - 41,890,729
singlet/doubletsinglet
Overlap genenone
Upstream gene1700074P13Rik, LOC194360, 1810009J06Rik, LOC100040208, 2210010C04Rik, LOC100039790, Tcrb-V8.2, LOC100040359, LOC100040333, Try4, 1810049H19Rik, Try10, Prss3, EG436523, EG386551, LOC100040233, Prss1, Prss2, Tcrb-V13, Ephb6, Trpv6, Trpv5, 1700034O15Rik, Kel, Olfr459, Pip, Sval2
Downstream geneSval1, Sval3, Sva, Tas2r139, Tas2r144, Gstk1, Tmem139, Casp2, Clcn1, 6330503C03Rik, Zyx, Epha1, Tas2r143, Tas2r135, Tas2r126, Olfr458, Olfr457, Olfr456, LOC232745, EG546896, Eapa2, BC011487, 3321401G04Rik, LOC100039918, GA_x5J8B7W6337-801345-802245, Olfr453, Olfr38, Olfr452, Olfr451-ps1, Olfr450, Olfr449, Olfr448, Olfr447, Olfr446, GA_x5J8B7W6337-1014614-1015483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138E23.T7 (MSMg01no138_e23.b1)MSMg01-138E23.TJ (MSMg01no138_e23.g1)
ACCAG344008AG344009
length704704
length of high quality
(start - end)		539 (48 - 586)625 (75 - 699)
definitionCHROMAT_FILE: MSMg01no138_e23.b1 PHD_FILE: MSMg01no138_e23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:19 2005CHROMAT_FILE: MSMg01no138_e23.g1 PHD_FILE: MSMg01no138_e23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTTGTTTATCCCTGAGCCCATTTTTTAATGGGGTTATTTGATT
TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTATTCCC
CTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGTTGGCCT
TTTTGTCTTATTGATGGAGTCTTTTGCCTTACAGAAGCTTTGTAGTTTCA
TTAGGTCCCATTTGTCAATTCTCGAGTGATATTTTGACTTCTTCCTTTGC
AATTTGTATCCCCTTGATCTCGTTTTGTTGTGTTCCACTCACCAGAGGTC
TTAAGTTCCCATAGAGGGTCCTGTGGGTATCTTGCGGGTGTCCACAGCCT
CTTCACCCAAGGTACCCCTGTGCTGGCATGGACCGGAAGGTTCTTGTAAT
TCTTTAAGGGATTTTTCTGCTTCCTCTTTAAGGTCTTCTACCTGCTTAGC
AGTGTTCTCCTGTATTTCTTTAAGCGAGTTATTAAAGTCCTTCTTGATGT
CCTCTACCATCATCCTGAGATATGCTTTTAAATCAGGGTCTAGCTCTTCG
GTTGTGTTGGGCTGCTCAGGACTGTGCAACGTGCGACTGCTGTGTTCTGT
TGAAGTTGAATGTTCTGACTTCTGCTATTACTTCTTTACTTTCGCTTCTG
CCCA

NCCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTATTCATATCTGGAGGCTGGCCCA
GAATTCTACTTTTGGGGGAATCAAAGGTGAAAGGTTGACAATGTTTGGGA
GTAGGAGGATAAAGAAAAAATAATCTTTAATATCAATAGAAAATAGTGAA
GCATTGGCTGGAATTTGAAATCTCTAGATGTGTATGGTCTTTTTAATGGC
ACATGGGTCTGATAATAGCCACAATCCTCAGAATTCTTTTTAATTGCAAA
GATAGGATTATTCCATGGGCTGTATTAGAGGTGGACATTTTGGAGGTATA
AACAGCTCCAGGAGACTCTTTCAGAAGAGAGCTTAGTTGTTAAAATAGCA
GACTAGATTGTATAGCTTGAGTTAGGGGCAAGGGCAGGAAAAGGGACAAG
GGAGGGCAGGATCTTCCAAGCTTGTCACCTAGATTAGCAGACTATCAGAC
ACCTGATTTCTGAGAAGCCAATTCTCTGTCTGGGAAACGAAAGCCTGATT
GGTTCTATCATGACATGGCTTTTGTCTTTATGAAGTTCAGTAGGCCCAAT
CCAGGTTGGGGTAGGGAGCACCCTCTCTGCTGCTATGCTTTGAGGGATTT
CTGGGCTACAAGCTATGTTCTACCATCTGTATCTCTTGGTAACTCAGAGA
ATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_e23.g1 MSMg01no138_e23.g1 CHROMAT_FILE:
MSMg01no138_e23.g1 PHD_FILE: MSMg01no138_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:19 2005
         (625 letters)



>mm_chr6_41889903_41890929
          Length = 1027

 Score = 1048 bits (542), Expect = 0.0
 Identities = 611/652 (93%), Gaps = 29/652 (4%)
 Strand = Plus / Plus

                                                                       
Query: 3   tattcatatctggaggctggcccagaattctacttttgggggaatcaaaggtgaaaggtt 62
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176 tattcatatctggaggctggcccagaattctacttttgggggaatcaaaggtgaaaggtt 235

                                                                       
Query: 63  gacaatgtttgggagtaggaggataaagaaaaaataatctttaatatcaatagaaaatag 122
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 236 gacaatgtttgggagtagggggataaagaaaaaataatctttaatatcaatagaaaatag 295

                                                                       
Query: 123 tgaagcattggctggaatt---------------------------tgaaatctctagat 155
           ||||| |||||||||||||                           ||||||||||||||
Sbjct: 296 tgaagtattggctggaattgtggagacaagaggatggtccttctgttgaaatctctagat 355

                                                                       
Query: 156 gtgtatggtctttttaatggcacatgggtctgataatagccacaatcctcagaattcttt 215
           ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |||
Sbjct: 356 gtgtatggtctttttaatggcacatgggtcttataatagtcacaatcctcagaattattt 415

                                                                       
Query: 216 ttaattgcaaagataggattattccatgggctgtattagaggtggacattttggaggtat 275
           ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||
Sbjct: 416 ttaattgcaaagataggattattccatgggctgtggtagaggtggacatgttggaggtat 475

                                                                       
Query: 276 aaacagctccaggagactctttcagaagagagcttagttgttaaaatagcagactagatt 335
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 gaacagctccaggagactctttcagaagagagcttagttgttaaaatagcagactagatt 535

                                                                       
Query: 336 gtatagcttgagttaggggcaagggcaggaaaagggacaagggagggcaggatcttccaa 395
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 gtatagcttgagttaggggcaagggcaggaaaagggacaagggagggcaggatcttccaa 595

                                                                       
Query: 396 gcttgtcacctagattagcagactatcagacacctgatttctgagaagccaattctctgt 455
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 gcttgtcacctagattagcagactatcagacacctgatttctgagaagccaattctctgt 655

                                                                       
Query: 456 ctgggaaacgaaagcctgattggttctatcatgacatggcttttgtctttatgaagttca 515
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 ctgggaaacgaaagcctaattggttctatcatgacatggcttttgtctttatgaagttca 715

                                                                       
Query: 516 gtaggcccaatccaggttggggtagggagcaccctctctgctgctatgctttgagggatt 575
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 gtaggcccaatccagattggggtagggagcaccctctctgctgctatgctttgagggatt 775

                                                               
Query: 576 tctgggctacaagctatgttctaccatctgtatctct--tggtaactcagag 625
           |||||||||||||| ||||||||||||||||||||||  |||||||||||||
Sbjct: 776 tctgggctacaagcaatgttctaccatctgtatctctcttggtaactcagag 827


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1027
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1017
Effective search space:   625455
Effective search space used:   625455
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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