GCGCGCCCCAATTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCGCGGAATTCTCTGGATTTCCTACCACACACTTTTGGTTTATTGA
TCTGTTTTGTTCAAAAGATTATTGAGCTGTTAATAACCACTTTCCTATAA
ATTTTTATAAAACTAGAGTAGAAACTTTGTGCTATCATGTAATAATTTTA
CACTACAATTTATTCATCCTTTGAACAAACTTTTTATTGAAAAGGAAATC
CTCCTCTAAAGACAAGGATGTTCTACCTTGCACATAGTTGGCAACACTGG
CAGGCAGTCATTTCTCTCTTCAACTTTCTTCAAATAATTGATTTAACATC
ATTATGCCATGCAGTTAAACATCAAATAAGTGCAGACCATGCTAATGGTG
TCGATTTTGTCACTCTGTCCTTAGTAAGCTATCAGATGTCACTTTATTAC
CATAGTCATTTTTCCATATTTCAAAATCACAGGTAAATGTACTAAAGTGG
CTTGTTATAAAAGATTCTTCTCTTATATTTAATGCTGTGAAATCCGTGCA
CATATAGATGAGGAGCTGAATAAAGTATGCCATATTCTTCCCATGTTTGT
AATATTATTTTAATCCGGTTTATAGCATTACTAAAATTATAATTCTTTTT
ATATTGTAGCATTACAAAAGTCTCCTAAGTCATGAAGTTTCTCATCTTTT
AGTGATTGA

CCTTTTTTTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCTTCTGTTGAGGGAC
ACCTGTGTTATTTTCCAACTTCTGGCTAACATAAATAAGGATGTTAAGAA
CATAATGGAGCACATGTGTTTGTTATATCTTGGAATGTCTTTTGGGTATA
TCCCCAGTATGGCTGGATCTTCAGGTAGAACTATTTACAATTTTCTGTGG
AACTACCAGATTGCTTTCCCAAGTGGTGTTACTAGCTTGCAATCCAGCAA
TGGAGGAGTGTTTCTCTTTCTTCACAGTCTCACCAGCGTTTGCTGTTGCC
TGAGTTTTTGATCTTGCCATTCTAATTAGTGTGAGGTGGAAACTCAGGGT
CATATTAATTTACATTTCCCTGATGACTAATGATGCTGAACATTTCTTTA
GGTGCTTCTTAGCCATTCAAGATTCCTCAGTTGAGAATTCTTTGGTTATC
ACTGTACCCCATTTTTAATAGGGTTGTTTGGTTCTCTGGAGTCTAGCTTC
TTGAGGTTTGTTTGTATATTTTTGGATATAGGGTTAATAAAAGATTTTTT
CCCAATCTGTAGGTGGCCATGAAGACTCAAATAATCTTACCCTTTTACTT
TACAGCCCATCAGTGTGAAAAACCAGAGCATTATTCTCTTATCACACCTT
AAATCTAAACT

Query= MSMg01no138_h03.b1 MSMg01no138_h03.b1 CHROMAT_FILE:
MSMg01no138_h03.b1 PHD_FILE: MSMg01no138_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:29 2005
         (508 letters)



>mm_chr6_62434879_62435786
          Length = 908

 Score =  928 bits (480), Expect = 0.0
 Identities = 498/504 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctggatttcctaccacacacttttggtttattgatctgttttgttcaaaagat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctggatttcctaccacacacttttggtttattgatctgttttgttcaaaagat 264

                                                                       
Query: 65  tattgagctgttaataaccactttcctataaatttttataaaactagagtagaaactttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattgagctgttaataaccactttcctataaatttttataaaactagagtagaaactttg 324

                                                                       
Query: 125 tgctatcatgtaataattttacactacaatttattcatcctttgaacaaactttttattg 184
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 325 tgctatcatgtaataattttacactacaatttattcatcctttgagcaaactttttactg 384

                                                                       
Query: 185 aaaaggaaatcctcctctaaagacaaggatgttctaccttgcacatagttggcaacactg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaaggaaatcctcctctaaagacaaggatgttctaccttgcacatagttggcaacactg 444

                                                                       
Query: 245 gcaggcagtcatttctctcttcaactttcttcaaataattgatttaacatcattatgcca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gcaggcagtcatttctctcttcaactttcttcaaataattgatttaacatcattatgcca 504

                                                                       
Query: 305 tgcagttaaacatcaaataagtgcagaccatgctaatggtgtcgattttgtcactctgtc 364
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tgcagttaaacatcaaattagtgcagaccatgctaatggtgtcgattttgtcactctgtc 564

                                                                       
Query: 365 cttagtaagctatcagatgtcactttattaccatagtcatttttccatatttcaaaatca 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttagtaagctatcagatgtcactttattaccatagtcatttttccatatttcaaaatca 624

                                                                       
Query: 425 caggtaaatgtactaaagtggcttgttataaaagattcttctcttatatttaatgctgtg 484
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 625 caggtaaatgtactaaagtggcttgttataaacgattcttctcttatatttaatgctgtg 684

                                   
Query: 485 aaatccgtgcacatatagatgagg 508
           ||| | ||||||||||||||||||
Sbjct: 685 aaaactgtgcacatatagatgagg 708


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 508
Length of database: 908
Length adjustment: 10
Effective length of query: 498
Effective length of database: 898
Effective search space:   447204
Effective search space used:   447204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)