BAC Information

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BAC

Clone NameMSMg01-138I02
Chromosome6 (Build37)
Map Location 51,219,848 - 51,220,332
singlet/doubletsinglet
Overlap genenone
Upstream geneOsbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
Downstream geneEG625167, Nfe2l3, Hnrpa2b1, Cbx3, Snx10, LOC100041820, Skap2, LOC666391, Hoxa1, Hoxa2, Hoxa3, Hoxa4, Hoxa5, Hoxa6, Hoxa7, Hoxa9, Hoxa10, Hoxa11, Hoxa13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138I02.T7 (MSMg01no138_i02.b1)MSMg01-138I02.TJ (MSMg01no138_i02.g1)
ACCAG344154AG344155
length695702
length of high quality
(start - end)
488 (49 - 536)---
definitionCHROMAT_FILE: MSMg01no138_i02.b1 PHD_FILE: MSMg01no138_i02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:34 2005CHROMAT_FILE: MSMg01no138_i02.g1 PHD_FILE: MSMg01no138_i02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:34 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNTTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCGTTCTCATGAGCCCCTCCCCGCCCTCACCAACTTTCCAGATG
GAAAGGTAAAAAGTTACCGCAACTTAGATTGAGTGAATTAGCTTCTTGCC
AAAGTTTAGTAACAGGACCGGAGGAGGTGGGGGCTGGACCGGCAATGGAT
TCTTGTGTAGAGTAGGTAGGAAGGAGGGGGCATTGTGTGATTCCACTGGT
CCGTTTGCTGTGACATTGCCACCAGAGTCTCTTAGGACACCCTTTCTACT
GGACTTTTACTCCTGCTGACTGTGGCAGTAATTTTCCATAATTAACTATC
CGTACCACTATTGGTCTCATCCTGGACTAAATTGCTTCTAATGAGTTATT
CTTCTTTGCCTTCACTGGGGGCGAGGCGGGATGGCAGGGAGCACACCTGC
AGGACGAAACTTCCAGAGGAAGACAGCCAGTTTGGTCTTTTGAGACAAAG
TTCTGAGACACTCCGACTCTGAGTATGATAGAAGTCAGTGCACTACAGAA
CTTTGTCTCTAGAGGCTGTGGTCGCCGTCTCCCCGCAAGGGCCCTGGACG
CCAAGCTGGTGGCCCTGTTGTCCACGTCGTTGCACCTTTCCTTTGGGGGA
AGGGAGCCCAGAGGGGGGTCAAGGGCTTTGTGAAGAAACTGAAAC
NNCCACGATGAAGGAGAGGCTGGNGACGTCTGGTATCGAACCCGNNNGAA
NNANNNAGGATTTTCGGCAGNCGCAANCNANNNCCCACCNNNNAGACAAA
GGCAGGAGACACACACACAAACCCCAGACCAAAACCGAGCGAGGGNACCG
AAGNAAAACACGACGCGCAGCCCCGGCGGGAAGCCAGCGGGCAGGAAAAC
CCCACNCACACCAAGAAGGGGAGGCGGACCCAGGGACAACCCAGGCCGCC
AGCATTGGCCAGCGGAGCAAACCCAAAGGAAGGGGAGCCCAGCACAGCAA
CGGGGAGCCCGAAACCTTTTTTTATTTATGCAGCCGCCCCCCCAACAAGG
AGACGGGCGCAAGGCCCCCCCCCCGCCCAACAGAAGAAGCAGCCCCCAGA
GGGGACAGCCGCAGAGCCCCAGGCCAAGCCAAAGGGACCCCCACAACCGA
GGGNCAGCCCACAACCGCGAGGGCCCCCGGCGCGAAGCGCCAGAGAACGA
AAGCCCCCACGAAAAGGAAACACAACACCCAAGGAACAACACCCGGGAAG
GAAACCCGCCGCGCGACACCGAGGACAGGAAGACGCACCCCAAAAGCGAC
CGAAGACCACCCCCCCGCGGCCGCAGGGAGACCGAGAACGCAAGGCAAAC
AACACCAACAAACGGACCTTTTTTTTTTATTTACGCAAAATCCCACCTTC
GA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_i02.b1 MSMg01no138_i02.b1 CHROMAT_FILE:
MSMg01no138_i02.b1 PHD_FILE: MSMg01no138_i02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:34 2005
         (488 letters)



>mm_chr6_51219645_51220532
          Length = 888

 Score =  915 bits (473), Expect = 0.0
 Identities = 482/485 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcgttctcatgagcccctccccgccctcaccaactttccagatggaaaggtaaaa 63
           ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 ggaattcgttctcatgaggtcctccccgccctcaccaactttccagatggaaaggtaaaa 629

                                                                       
Query: 64  agttaccgcaacttagattgagtgaattagcttcttgccaaagtttagtaacaggaccgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 agttaccgcaacttagattgagtgaattagcttcttgccaaagtttagtaacaggaccgg 569

                                                                       
Query: 124 aggaggtgggggctggaccggcaatggattcttgtgtagagtaggtaggaaggagggggc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 aggaggtgggggctggaccggcaatggattcttgtgtagagtaggtaggaaggagggggc 509

                                                                       
Query: 184 attgtgtgattccactggtccgtttgctgtgacattgccaccagagtctcttaggacacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 attgtgtgattccactggtccgtttgctgtgacattgccaccagagtctcttaggacacc 449

                                                                       
Query: 244 ctttctactggacttttactcctgctgactgtggcagtaattttccataattaactatcc 303
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctttctactggatttttactcctgctgactgtggcagtaattttccataattaactatcc 389

                                                                       
Query: 304 gtaccactattggtctcatcctggactaaattgcttctaatgagttattcttctttgcct 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 gtaccactattggtctcatcctggactaaattgcttctaatgagttattcttctttgcct 329

                                                                       
Query: 364 tcactgggggcgaggcgggatggcagggagcacacctgcaggacgaaacttccagaggaa 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 tcactgggggcgaggcgggatggcagggagcacacctgcaggacgaaacttccagaggaa 269

                                                                       
Query: 424 gacagccagtttggtcttttgagacaaagttctgagacactccgactctgagtatgatag 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gacagccagtttggtcttttgagacaaagttctgagacactccgactctgagtatgatag 209

                
Query: 484 aagtc 488
           |||||
Sbjct: 208 aagtc 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 488
Length of database: 888
Length adjustment: 10
Effective length of query: 478
Effective length of database: 878
Effective search space:   419684
Effective search space used:   419684
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)