Query= MSMg01no138_i05.b1 MSMg01no138_i05.b1 CHROMAT_FILE:
MSMg01no138_i05.b1 PHD_FILE: MSMg01no138_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:34 2005
(607 letters)
>mm_chr6_103371203_103372209
Length = 1007
Score = 1127 bits (583), Expect = 0.0
Identities = 598/603 (99%), Gaps = 2/603 (0%)
Strand = Plus / Plus
Query: 6 gaattcaagtttttcgctcatgaaagaattgtcttcca-tacaaagagaacttattccag 64
|||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 206 gaattcaagttttt-gttcatgaaagaattgtcttccaatacaaagagaacttattccag 264
Query: 65 ataatggttagggtctttccctggatatcactcataattgactgctcttttcctattcat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ataatggttagggtctttccctggatatcactcataattgactgctcttttcctattcat 324
Query: 125 gtttgttaatcccaaattccttcctcttgccaaaacctcatgtatctaacacccatcctt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gtttgttaatcccaaattccttcctcttgccaaaacctcatgtatctaacacccatcctt 384
Query: 185 tcattttcagtgcagcactaatgatttgataaaatggcttctaaaatccctaatcctagc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tcattttcagtgcagcactaatgatttgataaaatggcttctaaaatccctaatcctagc 444
Query: 245 tccaaagtgcctttgtttttacttggatgtggagcaatggaaattggaaagcaaataatt 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 445 tccaaagtgcctttgtttttacttggatgtggagcaatggaaattggaaaggaaataatt 504
Query: 305 atgggaatgcagacaaatctatttatatggtgtgcctatgactatagcacctctgctggt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgggaatgcagacaaatctatttatatggtgtgcctatgactatagcacctctgctggt 564
Query: 365 ctaattgggttctccactgaggggattatattttccagtcaggtatcaaatcagaacatt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctaattgggttctccactgaggggattatattttccagtcaggtatcaaatcagaacatt 624
Query: 425 ctccatcactgagaatttgtcttttcatattataggctgtaccagatatttttaagccaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctccatcactgagaatttgtcttttcatattataggctgtaccagatatttttaagccaa 684
Query: 485 cccatggtacacagataccaagcagaggcaggaagatcatgagtttaaactcaggctaga 544
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 685 cccatggtacacagataccaagctgaggcaggaagatcatgagtttaaactcaggctaga 744
Query: 545 ctacctaccaagttctagaccaacctaggctgtgataagatggagagaagtagagataaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctacctaccaagttctagaccaacctaggctgtgataagatggagagaagtagagataaa 804
Query: 605 tga 607
|||
Sbjct: 805 tga 807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no138_i05.g1 MSMg01no138_i05.g1 CHROMAT_FILE:
MSMg01no138_i05.g1 PHD_FILE: MSMg01no138_i05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:34 2005
(627 letters)
>mm_chr6_103522009_103523035
Length = 1027
Score = 1147 bits (593), Expect = 0.0
Identities = 617/625 (98%), Gaps = 2/625 (0%)
Strand = Plus / Minus
Query: 4 agaagaaaaag-aaaggtttcatgttgattccactggcatgtaaaatggccagccatcat 62
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 678 agaagaaaaagtaaaggtttcatgttgattccactggcctgtaaaatggccagccatcat 619
Query: 63 atactttctgagttttctcctgttggggcttgtgtcctctaggaccctgtggaacattcc 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 atactttctgagttttctcctgttggggcttgtgtcctctaggaccctgtggaacattcc 559
Query: 123 agacacacatccacatactggctctttaggaatcattcaaccaaatgccagacacattct 182
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 558 agacacacatccacatactgtctctttaggaatcattcaaccaaatgccagacacattct 499
Query: 183 atagctccatcaaaatgaggcaacaaagtaataaaattgttaaaaaactacttaaatgac 242
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 498 atagctccatcaaaatgaggcaacaaagtaataaaattgtt-aaaaactacttaaatgac 440
Query: 243 acagtcaggatttttctccaggtctttatgttacttggatttatttttaatggagttata 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 acagtcaggatttttctccaggtctttatgttacttggatttatttttaatggagttata 380
Query: 303 tttctatttaaagcaacatttcataagataaatgcatgtgctctaactaccacagttgag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tttctatttaaagcaacatttcataagataaatgcatgtgctctaactaccacagttgag 320
Query: 363 aaaccagccatgcctcatgtaacaatgcatcaaatgcaaaacagttatgctttaaatcct 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 aaaccagccatgcctcatgtaacaatgcatcaaatgcaaaacagttatgctttaaatcct 260
Query: 423 tgcccaactgaatttctattgcagatgtctgttctctcttgaaaataacactgtatggac 482
||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 tgcccaaatgaatttctagtgcagatgtctgttctctcttgaaaataacactgtatggac 200
Query: 483 taagagtgtggctcagttggtagggtgcttgcttcgcatgtgaagacgccaggttcaatt 542
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 199 taagagtgtggctcagttggtagggtgcttgcttcacatgtgaagaccccaggttcaatt 140
Query: 543 gccagcaacacataatatggggactgaatgtacacagctataatatcaacactggtgtgg 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 139 gccagcaacacataatatggggactgaatgtacacagctataatatcaacactggtgtgg 80
Query: 603 tgaaagaggagataggaatatcaga 627
|||||||||||||||||||||||||
Sbjct: 79 tgaaagaggagataggaatatcaga 55
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
