BAC Information

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BAC

Clone NameMSMg01-138L17
Chromosome6 (Build37)
Map Location 14,649,015 - 14,775,030
singlet/doubletdoublet
Overlap genePpp1r3a
Upstream geneGpr85, 2610001J05Rik, LOC100041043, LOC100040513, LOC667797
Downstream geneFoxp2, LOC100040568, Mdfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-138L17.T7 (MSMg01no138_l17.b1)MSMg01-138L17.TJ (MSMg01no138_l17.g1)
ACCAG344325AG344326
length702695
length of high quality
(start - end)		641 (58 - 698)613 (83 - 695)
definitionCHROMAT_FILE: MSMg01no138_l17.b1 PHD_FILE: MSMg01no138_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:51 2005CHROMAT_FILE: MSMg01no138_l17.g1 PHD_FILE: MSMg01no138_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:55:51 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,774,394 - 14,775,030)(14,649,015 - 14,649,167)
sequence
ATTTTTTTTGTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXCGCGGAATTCTTTCATGATGCGATAATTTTCCTTCAAGTCTTA
ATACTGTGGAGGTCACATGGTTTGCTGATATTCATGAGGGAGCTGTCACT
TTCAGGCTTCTAATATCAGTCACTCTTCTATCTATATTTGGCTTATGGAT
TCAGGAAAGTGTGATAGCAGTTATTAGCTGCTCTCAGAAAATCCTCTTAC
AAGATAGATTTATTTCCTGATTAATGATGGAAATGATCCAGTATTAATTT
CAGTTTTTGATATCAACAATTTTGTGTTAACATCAGTCTTGCTGTGTTCA
CCTTTCAAATTACTATGATCATTCTAATGATTAAAAGCAATTGTTTGATT
TAGACACACTATGTAATTACCAGACAGAGCATTTCTGACATTTCCAACTA
AATTTGGGTACATGAGGTCACATCTCCTGGGCCAACAAAAGGTTTTCCTA
GAGCAGTATTTTTTGATTATGTGAATCTACGCAAGTTTAAGGCATGAAGA
AACAAGGGAATGATAATTCTCATAAGTCCTGCTTACTAAATATTGCGTTC
AATAGGTACTTTGGGATTTTAAAATCTTTATTACCTTGAAGTTAGATAAA
TTATTCAGTCTCCTGTTTGAACTGTCATATATTTCTCAACTTTTGTTTAA
TA

CTTCTNNNTCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCATTATTTTTTTCTACCA
TACATACACAAACACACACTGGTTTTGAGGAAGAAGACATTTTATTCCTC
TAAAATCGCCTATGCATCTATTGGCCTAGGATTGGCCCAGGAGAATATGC
CCTTCTTAGGTATTTGTGTTGAGAGGGAGCAGAACAGGAAATTCATTATT
GATTTGCTTGTTGTTCATGGAAAAGAAAAAAAGAAATGAGACTCAAAGAA
GGAGCAGCATTTGATCATTTCACACTAATTGGCAACACTCACCAAGCACA
TTCTTATATTTTTGGTTGTGAGGCTAGCCTTTAAAGGCTGAGCCATCTCT
CCAGCCCAACCAAGTGTGTTCTTAAGAAGAATCTTTTTTTTTTTTTAATC
CAAGCATGAATTGTCAACGAGATCATCTTACATCCGCAAAAATTTCTGAA
ACGTTACAATGAATCCATCAAGTTTTTGAAAAATTAAGAGAATTTTCAGA
CTTGATTTTTAATTCCATTGAAACTTCTTTATTACTTTTTGGTATTTCCA
TGTGTAAGACAAAGCATTGCTTTGAGATTAAATGCAAGTGAATTCATTCT
GGAAAATAGTTACCTGTTTGAACTAGAACTGCAAGTGTTTGACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no138_l17.b1 MSMg01no138_l17.b1 CHROMAT_FILE:
MSMg01no138_l17.b1 PHD_FILE: MSMg01no138_l17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:51 2005
         (641 letters)



>mm_chr6_14774190_14775230
          Length = 1041

 Score = 1216 bits (629), Expect = 0.0
 Identities = 635/637 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttcatgatgcgataattttccttcaagtcttaatactgtggaggtcacatggt 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaattctttcatgatgagataattttccttcaagtcttaatactgtggaggtcacatggt 782

                                                                       
Query: 65  ttgctgatattcatgagggagctgtcactttcaggcttctaatatcagtcactcttctat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 ttgctgatattcatgagggagctgtcactttcaggcttctaatatcagtcactcttctat 722

                                                                       
Query: 125 ctatatttggcttatggattcaggaaagtgtgatagcagttattagctgctctcagaaaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 ctatatttggcttatggattcaggaaagtgtgatagcagttattagctgctctcagaaaa 662

                                                                       
Query: 185 tcctcttacaagatagatttatttcctgattaatgatggaaatgatccagtattaatttc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 tcctcttacaagatagatttatttcctgattaatgatggaaatgatccagtattaatttc 602

                                                                       
Query: 245 agtttttgatatcaacaattttgtgttaacatcagtcttgctgtgttcacctttcaaatt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agtttttgatatcaacaattttgtgttaacatcagtcttgctgtgttcacctttcaaatt 542

                                                                       
Query: 305 actatgatcattctaatgattaaaagcaattgtttgatttagacacactatgtaattacc 364
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 541 actatgatcattctaatgattaaaagcaattgtttgatttagacacactatgcaattacc 482

                                                                       
Query: 365 agacagagcatttctgacatttccaactaaatttgggtacatgaggtcacatctcctggg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agacagagcatttctgacatttccaactaaatttgggtacatgaggtcacatctcctggg 422

                                                                       
Query: 425 ccaacaaaaggttttcctagagcagtattttttgattatgtgaatctacgcaagtttaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 ccaacaaaaggttttcctagagcagtattttttgattatgtgaatctacgcaagtttaag 362

                                                                       
Query: 485 gcatgaagaaacaagggaatgataattctcataagtcctgcttactaaatattgcgttca 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gcatgaagaaacaagggaatgataattctcataagtcctgcttactaaatattgcgttca 302

                                                                       
Query: 545 ataggtactttgggattttaaaatctttattaccttgaagttagataaattattcagtct 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ataggtactttgggattttaaaatctttattaccttgaagttagataaattattcagtct 242

                                                
Query: 605 cctgtttgaactgtcatatatttctcaacttttgttt 641
           |||||||||||||||||||||||||||||||||||||
Sbjct: 241 cctgtttgaactgtcatatatttctcaacttttgttt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 641
Length of database: 1041
Length adjustment: 10
Effective length of query: 631
Effective length of database: 1031
Effective search space:   650561
Effective search space used:   650561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no138_l17.g1 MSMg01no138_l17.g1 CHROMAT_FILE:
MSMg01no138_l17.g1 PHD_FILE: MSMg01no138_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:51 2005
         (613 letters)



>mm_chr6_14648355_14649367
          Length = 1013

 Score =  288 bits (149), Expect = 7e-82
 Identities = 152/153 (99%)
 Strand = Plus / Plus

                                                                       
Query: 461 ttttcagacttgatttttaattccattgaaacttctttattactttttggtatttccatg 520
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttttcagacttgatttttaattccattgaaacttctttattactttttggtatttccatg 720

                                                                       
Query: 521 tgtaagacaaagcattgctttgagattaaatgcaagtgaattcattctggaaaatagtta 580
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 tgtaagacaaagcgttgctttgagattaaatgcaagtgaattcattctggaaaatagtta 780

                                            
Query: 581 cctgtttgaactagaactgcaagtgtttgacag 613
           |||||||||||||||||||||||||||||||||
Sbjct: 781 cctgtttgaactagaactgcaagtgtttgacag 813


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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