BAC Information

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BAC

Clone NameMSMg01-140F08
Chromosome6 (Build37)
Map Location 117,269,960 - 117,270,342
singlet/doubletsinglet
Overlap geneEG640142
Upstream geneAnubl1, March8, Alox5, LOC100043432, Olfr211, Olfr212, Olfr213, EG434080, Olfr214, Olfr215, Zfp422, Rassf4, 8430408G22Rik, C230095G01Rik, LOC100043439, Cxcl12, LOC213422
Downstream geneLOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338, Rasgef1a, Galnact2, Ret, 1700069P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140F08.T7 (MSMg01no140_f08.b1)MSMg01-140F08.TJ (MSMg01no140_f08.g1)
ACCAG345500AG345501
length725718
length of high quality
(start - end)
436 (48 - 483)384 (69 - 452)
definitionCHROMAT_FILE: MSMg01no140_f08.b1 PHD_FILE: MSMg01no140_f08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:02 2005CHROMAT_FILE: MSMg01no140_f08.g1 PHD_FILE: MSMg01no140_f08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXCTAATTGCAGAAGATCCGCGGAATT
CTCCATAATTTTCAGAATTAGTTTATCTGATTTTTCAATGTAGATTGAGA
ATTTGATAAGGATAGTATCAAAACCGTGGTTGGTTGGGAAGCCTTGCGCT
CCTAACACTGTTAAGCCATTACATCCCTGAACAACATGTTTTTCTATTTA
GATTTTTTTCTACTTCATTTAGACGATACTGAAGTTTTCAGTGTACATGT
TGTGTATCTCTTTTGATAAATTATTGGGTTCTTAAATGTTAGTTTTAAGG
GGTAATGTTTAAGGTCACATCCACACTGTTTATTATTAATGTGTAATGAC
AATTGACTTTTGTATGTTGACCAGAATGTTCTCTGAATTCATTTCTAATA
TTTTTAAGCAGTGTTTAACGGACTCTTTAGGACTTCTCTTTTTTAAAAAA
TGTAACATCTTTTGGACACTTTCATCCATATTGTGTACAAAATTTTACTG
AATGCAAATCAGATAATAATGGGTTGTGATTTGTATTCACATTCCTTACA
CCTTATAGTCCCTCCCACATCGTTGACCTCTGCTTCGCCCCGCTAGTCCC
CTTCCTACCGCATGTCCTACTTAATGTTTGACTTCACTATGCGTACAACA
ACAAATCTGAATCTTCCCCTTGCATCTGGCCCCCCTATGGCCCCTTTTTT
ATTGATATGAATCCTTGCCTACACG
GCTGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAACTCCTCTGAGATTGCCCACTGTGCTATGGT
TGTTCTAAAAGACGAAGAAAAAAAAATCATGGATTTAACCTGTACCTCAC
CCCACACATATGCACGTGCTAGGTGGGTATAACAGGAGTTTCAGAAGCAA
ACCAGAGGCCGAGCTGATTCATGCAGAAGTGGGAAAGAATGGGCTCCTTC
AACTCTACCCTCCTTCAGTGAGTGCTGAGCTCAGCTCATTTGTACTTTTA
TTTATCTGTGAGAGAGGAGAAGGGACATTTTGAAATATTTTTATAAGAGG
CTCTGTGACTTTGCAACCTTCAGTACATATCTGCCAGGGCTGGTCACCAT
GAGCCCTGTGTTAAGCTAATAGTCCATCAAGCTCCCTGGCAGAACATTCA
GGATACAATGTCAACCCATGGCAACCTGAGAAATGGAGAAACATCAGCAC
AGTCAACTGATCTCTTCATTTTGCTCAAGACAAGAGACCTTTTCCGAGAA
TTGCAAATGGGGAGGGAGTGACATTGGACAAAAGGAGGTGTGTGTGTTGC
AAGATGGGAAAGTGTTTGCAAGTCCCACTGGAGATCCTACCAGCTAGTCC
AGGATAATGCCCGTTTCCCATCTCAAGGCTTTGGCTCGATCTTGCAGTTT
AAGATTTAATGAGGAAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_f08.g1 MSMg01no140_f08.g1 CHROMAT_FILE:
MSMg01no140_f08.g1 PHD_FILE: MSMg01no140_f08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:02 2005
         (384 letters)



>mm_chr6_117269760_117270542
          Length = 783

 Score =  688 bits (356), Expect = 0.0
 Identities = 377/384 (98%), Gaps = 1/384 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactcctctgagattgcccactgtgctatggttgttctaaaagacgaagaaaaaaaaatc 60
           ||||||||||||||||| |||||||||||| |||||||||||||||||| ||||||||| 
Sbjct: 583 aactcctctgagattgctcactgtgctatgattgttctaaaagacgaag-aaaaaaaatt 525

                                                                       
Query: 61  atggatttaacctgtacctcaccccacacatatgcacgtgctaggtgggtataacaggag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 atggatttaacctgtacctcaccccacacatatgcacgtgctaggtgggtataacaggag 465

                                                                       
Query: 121 tttcagaagcaaaccagaggccgagctgattcatgcagaagtgggaaagaatgggctcct 180
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 464 tttcagaagcaaaccagaggccgagctgattcaggcagaagtgggaaagaatgggctcct 405

                                                                       
Query: 181 tcaactctaccctccttcagtgagtgctgagctcagctcatttgtacttttatttatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tcaactctaccctccttcagtgagtgctgagctcagctcatttgtacttttatttatctg 345

                                                                       
Query: 241 tgagagaggagaagggacattttgaaatatttttataagaggctctgtgactttgcaacc 300
           |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgagagaggagaagggccactttgaaatatttttataagaggctctgtgactttgcaacc 285

                                                                       
Query: 301 ttcagtacatatctgccagggctggtcaccatgagccctgtgttaagctaatagtccatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttcagtacatatctgccagggctggtcaccatgagccctgtgttaagctaatagtccatc 225

                                   
Query: 361 aagctccctggcagaacattcagg 384
           ||||||||||||||||||||||||
Sbjct: 224 aagctccctggcagaacattcagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 783
Length adjustment: 9
Effective length of query: 375
Effective length of database: 774
Effective search space:   290250
Effective search space used:   290250
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)