Query= MSMg01no140_h13.b1 MSMg01no140_h13.b1 CHROMAT_FILE:
MSMg01no140_h13.b1 PHD_FILE: MSMg01no140_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:12 2005
(520 letters)
>mm_chr6_22141361_22142280
Length = 920
Score = 930 bits (481), Expect = 0.0
Identities = 511/521 (98%), Gaps = 1/521 (0%)
Strand = Plus / Minus
Query: 1 agcaagccacagtgagcaatccagaaagcactcttccatgacctctctctgcatcagctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 814 agcaagccacagtgagcaatccagaaagcactcttccatgacctctctctgcatcagctt 755
Query: 61 ctgcgtccaagttcctgcccagcttgtcctatcctgtcctgacctccatcaatgatgaac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 754 ctgcgtccaagttcctgcccagcttgtcctatcctgtcctgacctccatcaatgatgaac 695
Query: 121 agtgatatagaaagacagaccaaataaaccctttcctccccaagttgctttgatccttga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 694 agtgatatagaaagacagaccaaataaaccctttcctccccaagttgctttgatcctggg 635
Query: 181 tttcatcatagcaatagaaaccttataaggcactgtaca-ttttttctttttatgtataa 239
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 634 tttcatcatagcaatagaaaccttataaggcactgtacatttttttctttttatgtataa 575
Query: 240 atttattttaaatatctcatgccaggcttcattgctgtgtgaccacactttgaattagat 299
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 ttttattttaaatatctcatgccaggcttcattgctgtgtgaccacactttgaattagat 515
Query: 300 ttaaactagacagtctagttctgagctcatctcctgttggaaacaagtcagccatctggt 359
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 514 ttaaactggacagtctagttctgagctcatctcatgttggaaacaagtcagccatctggt 455
Query: 360 ggctggggatgtagctggttggcagagtgttttcctggcacaagaccttgagttcaaacc 419
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct: 454 ggctggggatgtagctggttggcagagtgttttcctggcacaaaaccttgagttcaatcc 395
Query: 420 ctagtactgaagaaaagaggctggaggttcatggtatagcgttggcttcaccctcagaat 479
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 394 ctagtactgaagaaaagaggttggaggttcatggtatagtgttggcttcaccctcagaat 335
Query: 480 caaactccactcctccttccccagttagaatagttggaaag 520
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 caaactccactcctccttccccagttagaatagttggaaag 294
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 520
Length of database: 920
Length adjustment: 10
Effective length of query: 510
Effective length of database: 910
Effective search space: 464100
Effective search space used: 464100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_h13.g1 MSMg01no140_h13.g1 CHROMAT_FILE:
MSMg01no140_h13.g1 PHD_FILE: MSMg01no140_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:13 2005
(306 letters)
>mm_chr6_22010987_22011692
Length = 706
Score = 429 bits (222), Expect = e-125
Identities = 276/308 (89%), Gaps = 24/308 (7%)
Strand = Plus / Plus
Query: 5 actaggaataaaaatttcaatgaaccgataatttttctttaaatttaagacacatttcta 64
||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 205 actaggaataaaaatttcaatgaaccggtaatttttctttaaatttaagatacatttcta 264
Query: 65 aaataaatagcatgtgattttttttctatctgtgtcatttcatagtacacttgtggttga 124
|||||||||||||||||||||||||| | ||||||||||||||||||||||| ||| |||
Sbjct: 265 aaataaatagcatgtgattttttttccacctgtgtcatttcatagtacacttatggctga 324
Query: 125 ctgcggagaccttagctctttaattgtgctcttttaagctaaagcctggtttgctcagcc 184
||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 325 ctgcggagaccttagctcttt-------------taagctaaagcctggtttgctcagcc 371
Query: 185 tggcctcaaacactctgagtagccaatactatccttgaatttctgatttccttgcctcta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 tggcctcaaacactctgagtagccaatactatccttgaatttctgatttccttgcctcta 431
Query: 245 tttttatt------tgattggggttgtaggtgtgtgccaccacccctggtttgaaatccc 298
|| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 432 -----atccccaagtgattggggttgtaggtgtgtgccaccacccctggcttgaaatccc 486
Query: 299 cttcacac 306
||||||||
Sbjct: 487 cttcacac 494
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 306
Length of database: 706
Length adjustment: 9
Effective length of query: 297
Effective length of database: 697
Effective search space: 207009
Effective search space used: 207009
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
