BAC Information

Click to search

BAC

Clone NameMSMg01-140L01
Chromosome6 (Build37)
Map Location 82,441,753 - 82,442,160
singlet/doubletsinglet
Overlap geneTacr1
Upstream geneLOC232143, 1700009C05Rik, AW146020, Mrpl19, Tmem166, EG622198
Downstream genePole4, LOC100043412, Hk2, EG622318, Sema4f, D6Mm5e, Dok1, Loxl3, Htra2, Aup1, Dqx1, Tlx2, Pcgf1, Lbx2, A230058J24Rik, Mrpl53, Gcs1, Wbp1, Znhit4, Rtkn, Wdr54, 1700003E16Rik, Dctn1, C330016K18Rik, Mthfd2, Mobk1b, Bola3, D230004J03Rik, Dguok
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140L01.T7 (MSMg01no140_l01.b1)MSMg01-140L01.TJ (MSMg01no140_l01.g1)
ACCAG345760AG345761
length707705
length of high quality
(start - end)
467 (49 - 515)492 (76 - 567)
definitionCHROMAT_FILE: MSMg01no140_l01.b1 PHD_FILE: MSMg01no140_l01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:29 2005CHROMAT_FILE: MSMg01no140_l01.g1 PHD_FILE: MSMg01no140_l01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:58:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAAGAGAGATCC
GCGGAATTCTGGGGATTCCCGTCAGGTCCTTTTCAGGGTGGGTGGGGGAG
AACTTGAGGGATGGCACGGAGGTTAAGGCCTCATGCTCTATATCCATGGA
TACTGAAGTTTAGATCCCAGCACCTATGCAACAAGTTGGGTGTCTCCACA
AATGCCTGTAACTCTAGGTCCCAGGGGATTGGGTGGAGGATGATTGCTGG
GGTGGCTTCCATCCTGACCAAGTTATGAGCTCTGGGTTCAGGAGAGACCC
CGCCTCAGTGGACTAACGCAGGTCCTCCTGTTTCTACAGGAGGCACCCAG
TGACTCGGAGCTCAGTGACTGGGCTCTCTCCCATGGCCCCTCTCAGTGAT
CATTTACAAGTATTGCCTGAACTACTTTTTCTGGTCTATCCTTAGACTAT
CTGACTTATGACACACAATGTTAAAAACTCATAAGGAATGTCAGATAGAA
TTTTCAAAAGTTAGGAACCCATCTAGCACTGTTCTCAGAAGGATTTTCAT
TATTGACATGCCTGTAATGCATATTGCATGGCCAAACACGTGCCATCGTC
TTACCGAATGCAAAAAAAATGACATGTTGCAAGTTCTTCCAACATCAGGA
GTTTTATCCTTGAGGCTAGCAACGATGATTCCACGGTTTAGACCCTTTAC
TGTTTTT
NCTCGATGAAGTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAG
AGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAA
ATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGTCTAAGAT
CAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAA
CACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAA
TCCGTCTGGCGGTTCCTCATATAATTGGACATAGTACTACCGGAGGATCC
AGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGA
AGGACACATGCTCCACTATGTTCATAGCAGTATTATTTATAATAGCCAGA
AGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAAT
GTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAAT
TTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGT
GAGGTAACACATTCATAATGGAACTCACACAATATGTATTCACTGATAAG
TGGATATTAGTCCAAAACCTTATGATACCCCAGATATAAGATTATATTTC
CTAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_l01.b1 MSMg01no140_l01.b1 CHROMAT_FILE:
MSMg01no140_l01.b1 PHD_FILE: MSMg01no140_l01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:29 2005
         (467 letters)



>mm_chr6_82441294_82442160
          Length = 867

 Score =  743 bits (384), Expect = 0.0
 Identities = 402/408 (98%)
 Strand = Plus / Minus

                                                                       
Query: 60  gggatggcacggaggttaaggcctcatgctctatatccatggatactgaagtttagatcc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 gggatggcacggaggttaaggcctcatgctctatatccatggatactgaagtttagatcc 808

                                                                       
Query: 120 cagcacctatgcaacaagttgggtgtctccacaaatgcctgtaactctaggtcccagggg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 cagcacctatgcaacaagttgggtgtctccacaaatgcctgtaactctaggtcccagggg 748

                                                                       
Query: 180 attgggtggaggatgattgctggggtggcttccatcctgaccaagttatgagctctgggt 239
           | ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 747 actgggtggaggatgattgctggggtggcttccatcctggccaagttatgagctctgggt 688

                                                                       
Query: 240 tcaggagagaccccgcctcagtggactaacgcaggtcctcctgtttctacaggaggcacc 299
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 687 tcagaagagaccccgcctcagtggactaactcaggtcctcctgtttctacaggaggcacc 628

                                                                       
Query: 300 cagtgactcggagctcagtgactgggctctctcccatggcccctctcagtgatcatttac 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 627 cagtgactcggagctcagtgactgggctctctcccatggcccctctcagtgattatttac 568

                                                                       
Query: 360 aagtattgcctgaactactttttctggtctatccttagactatctgacttatgacacaca 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 aagtattgcctgaactactttttctggtctatccttagactatctgacttatgacacaca 508

                                                           
Query: 420 atgttaaaaactcataaggaatgtcagatagaattttcaaaagttagg 467
           |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 507 atgttaaaaactcataaggaatgtcagatagagttttcaaaagttagg 460


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 467
Length of database: 867
Length adjustment: 10
Effective length of query: 457
Effective length of database: 857
Effective search space:   391649
Effective search space used:   391649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)