NGGATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAAATGCG
CGGAATTCCATCCAATATTCGCAATGACTGAAGTACACCAGTCAACACGA
TGAATCCAGTTAATGTGAATTGACAAGATCATCAAAAACTTTAGAAAAAC
ATGCATAGTTTATAGCTACTTATAAAAAGTTACATATAATTAAGGAATGT
ACACGCATCCCAGAGAAGGTACAGATGGCTTCGAGAATGGTAAATAGCTA
ACTTCCATTCTCAGGGGCTTCTGCCTTGCAGACCAGGGCAGAGGAGGATT
ACTGTGTCATTTCTTGTCCAGATTTGCATGTCTTAAACGTTGCATGATCA
CTAAGGAAAAAGAGTAGGTTCCAGGAAAACAAAAGCCCTTTATTTTGTTG
TTGAGAAGGAGATAGAGGTTGAAGGAAGACTTCTAAGAGGAGATGTCTGA
GCTGAGCCTAAGAGATCTGAGGTTCTAACAAACCTGGGAAAGGGTTGCTG
GTAAAGAGAACAGTGCAGGTAGAGGGAAACAGCAAGGCTCTTTGGTACGA
GGAAACACACAGCTTCTTTAAGTCACACAGAGAGAGTTAGGTTTCAGCTC
TGTGCAGACTTTTCTCCAGGCAGATGCAGAAAACAAGGAGATTTTCATGA
TACTGGGGTGTAGAAAGCTTGATACATTGAAAACAAAACATGGTCAGAAT
CT

CCTTCAATATAGTGCTAAGCCTGGCGACCGCCTGTCTTCTAATCATAGGT
GAACTATATAATGATTTCTGAAATACAGCCCACTATGAATCCTCGGCCAT
CTTGACAATTTCTGCTTTGTTTCATGTGTGTGTGTGTGTGTGTGTCTATG
TGTCGTCGTCTCCATGTCCACTCATTACTCCTTTTCTATCCCCCAAACAC
CCTCCTCTCCCACTCCTCATCACTCTACCCCTATTAACTCCCACTATACA
CACCCACAAACCAAACCTTACTCTACACATCCACAACAACACTCCAAAAC
CCCTCACACATCAACCTAAATATACTCATCCTCCTTTTTCTCTCTCCCTC
TTTTTATCCCATTTATACACTCCTATACACCTTCTTCTCCTCCTCACTCA
CTCTACAACTACTCCTCTACACAACACCATTACATCTCCTCTTCTCCCTC
TACTCTCTTTCTCCTCTCATCAAACTATCTTTCTATCACTACACATCACA
CATCAAAAAAATCATCCTACATCCTACTAATCATACTATCTTCTCATAAA
TCTATCTACATAAACTACATCTATACACTCAACACTCATCTCATTACTCA
CACAAACACTCATACAACAACACTCTACATATACTACATACACTTAATTC
CCTCCAACTTACTCCCTTCATCTACTTTCTATACTTTACCTTCTTACTTC
TAATTCAACACTCTACTCCTACATCACTACAATAATCTTTACACTATATA
TTCACCTCTACTCCCCTTC

Query= MSMg01no140_m22.b1 MSMg01no140_m22.b1 CHROMAT_FILE:
MSMg01no140_m22.b1 PHD_FILE: MSMg01no140_m22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:39 2005
         (548 letters)



>mm_chr6_53604788_53605735
          Length = 948

 Score = 1036 bits (536), Expect = 0.0
 Identities = 545/548 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgactgaagtacaccagtcaacacgatgaatccagttaatgtgaattgacaagatcat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 aatgactgaagtacaccagtcaacacgatgaatccagttaatgtgaattgacaagatcat 689

                                                                       
Query: 61  caaaaactttagaaaaacatgcatagtttatagctacttataaaaagttacatataatta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 caaaaactttagaaaaacatgcatagtttatagctacttataaaaagttacatataatta 629

                                                                       
Query: 121 aggaatgtacacgcatcccagagaaggtacagatggcttcgagaatggtaaatagctaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 aggaatgtacacgcatcccagagaaggtacagatggcttcgagaatggtaaatagctaac 569

                                                                       
Query: 181 ttccattctcaggggcttctgccttgcagaccagggcagaggaggattactgtgtcattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 568 ttccattctcaggggcttctgccttgcagaccagggcagaggaggattactgtgtcattt 509

                                                                       
Query: 241 cttgtccagatttgcatgtcttaaacgttgcatgatcactaaggaaaaagagtaggttcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 cttgtccagatttgcatgtcttaaacgttgcatgatcactaaggaaaaagagtaggttcc 449

                                                                       
Query: 301 aggaaaacaaaagccctttattttgttgttgagaaggagatagaggttgaaggaagactt 360
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aggaaaacaaacgccctttattttgttgttgagaaggagatagaggttgaaggaagactt 389

                                                                       
Query: 361 ctaagaggagatgtctgagctgagcctaagagatctgaggttctaacaaacctgggaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 ctaagaggagatgtctgagctgagcctaagagatctgaggttctaacaaacctgggaaag 329

                                                                       
Query: 421 ggttgctggtaaagagaacagtgcaggtagagggaaacagcaaggctctttggtacgagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 328 ggttgctggtaaagagaacagtgcaggtagagggaaacagcaaggctctttggcacgagg 269

                                                                       
Query: 481 aaacacacagcttctttaagtcacacagagagagttaggtttcagctctgtgcagacttt 540
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 268 aaacacacagcttctttaagtcacacagagagtgttaggtttcagctctgtgcagacttt 209

                   
Query: 541 tctccagg 548
           ||||||||
Sbjct: 208 tctccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 548
Length of database: 948
Length adjustment: 10
Effective length of query: 538
Effective length of database: 938
Effective search space:   504644
Effective search space used:   504644
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)