Query= MSMg01no140_n22.b1 MSMg01no140_n22.b1 CHROMAT_FILE:
MSMg01no140_n22.b1 PHD_FILE: MSMg01no140_n22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:44 2005
(412 letters)
>mm_chr6_98209294_98210104
Length = 811
Score = 760 bits (393), Expect = 0.0
Identities = 408/413 (98%), Gaps = 3/413 (0%)
Strand = Plus / Plus
Query: 1 tttagagtgttaaaatcaaccttccgcaaagttagtataaaatttcaggtcttaaaaata 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 tttagagtgttaaaatcaaccttccacaaagttagtataaaatttcaggtcttaaaaata 260
Query: 61 atggcaactttt-taaagtgtttgggacatgtcaaagggtaagaaggggtcttcttttat 119
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atggcaa-ttttataaagtgtttgggacatgtcaaagggtaagaaggggtcttcttttat 319
Query: 120 ctagaatgtttatttggtctacttattagtaatggcaggtctctggaaaattatttgcaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 ctagaatgtttatttggtctacttattagtaatggcaggtctctggaaaattatttgcaa 379
Query: 180 agcccacatactcattttagtctaggctttctggatgaaagtattgtctaggagtctttg 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 agcccacatactcattttagtctaggctttctggatgaaagtattgtctaggagtctttg 439
Query: 240 atataatctttcctgtttttattatttttttaaatgggtgaaaacatgggaaaagaagga 299
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 440 atataatctttcctgtttttattatttttt-aaatgggtgaaaacatgggaaaagaagga 498
Query: 300 tacccacatagataaaatatgggatggacacccctggtaaggaatcacacaaaacatcag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tacccacatagataaaatatgggatggacacccctggtaaggaatcacacaaaacatcag 558
Query: 360 tctattggaactgaaggacgctgttacttggctcctgtgctggctcatgtgag 412
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 559 tctattggaactgaaggacgctgttacttggcacctgtgctggctcatgtgag 611
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 811
Length adjustment: 9
Effective length of query: 403
Effective length of database: 802
Effective search space: 323206
Effective search space used: 323206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no140_n22.g1 MSMg01no140_n22.g1 CHROMAT_FILE:
MSMg01no140_n22.g1 PHD_FILE: MSMg01no140_n22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:44 2005
(580 letters)
>mm_chr6_98360746_98361724
Length = 979
Score = 1013 bits (524), Expect = 0.0
Identities = 564/582 (96%), Gaps = 12/582 (2%)
Strand = Plus / Minus
Query: 1 acttacacttgaggatgtgcgcaaggcatctgttcatgaatagcggaatgatgaccaagt 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 acttacacttggggatgtgcgcaaggcatctgttcatgaatagcggaatgatgaccaagt 634
Query: 61 cctgatggggaaggcacactgccatctttccctgaaatacatcccaactgagaaatcaat 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 cctgatggggaaggcacgctgccatctttccctgaaatacatcccaactgagaaatcaat 574
Query: 121 tgcttcatgcctgggttttcttgtatgtcgctttttccccattaaatataaaagtcctgt 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 573 tgcttcatgcctgggttttcttgtatgtcgcttttttcccattaaatataaaagtcctgt 514
Query: 181 cgatgatttttttctaagccacctacttttatgctggatatttgttacacgacaaaggaa 240
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 cgatga-ttttttctaagccacctacttttatgctggatatttgttacacgacaaaggaa 455
Query: 241 atgactctatcaggcgaaactcatctgtgtgttcctttatgtgtctacacttgaactttc 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 454 atgac-ctatcaggcgaaactcatctgtgtgttcctttatgtgtctacacttgaactttc 396
Query: 301 tatgagaaattagtatttgattcactagctaggcatcatggctctgaatttcagaaatca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 395 tatgagaaattagtatttgattcactagctaggcatcatggctctgaatttcaaaaatca 336
Query: 361 tttttaattacatggtgcacaaaaaatacctcctaatctttcatctgccacaaaaaag-a 419
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 335 tttttaattacatggtgcacaaaaaatacctcctaatctttcatctgccacaaaaaagaa 276
Query: 420 aaaaaaaaacaacaatatgaatcatgttctaacccctacagtacctctagttagaagagc 479
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 275 aaaaaaaaacaacaatatgaatcatgttctaacccttacagtacctctagttagaagagc 216
Query: 480 taacagagtcatatacattcattcattcattcattcattgattcatgaaatagtttatat 539
|||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 215 taacagagtcatatacattcattcattcattc--------attcatgaaatagtttatat 164
Query: 540 tttgaactttaaata-tatgtttccattttgtatgtttaaaa 580
||||||||||||||| ||||||| ||||||||||||||||||
Sbjct: 163 tttgaactttaaatattatgttttcattttgtatgtttaaaa 122
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 979
Length adjustment: 10
Effective length of query: 570
Effective length of database: 969
Effective search space: 552330
Effective search space used: 552330
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
