Query= MSMg01no141_e18.b1 MSMg01no141_e18.b1 CHROMAT_FILE:
MSMg01no141_e18.b1 PHD_FILE: MSMg01no141_e18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:32 2005
(283 letters)
>mm_chr6_12443372_12444054
Length = 683
Score = 447 bits (231), Expect = e-130
Identities = 270/283 (95%)
Strand = Plus / Minus
Query: 1 ttgagggttaccccttatggtgacttaggagccatgacatggataagcagcatgacacag 60
|||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 483 ttgagggttatgcattatggtgacttaggagccatgagatggataagcagcatgacacag 424
Query: 61 cacattgctgtgtcatctaatgtgcttaaagcgctgagtgcttcaggaatcccaacttcc 120
|||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||
Sbjct: 423 cacattgctgtgtcatctaatgtggttaaagctctgagtgcttcaggaatcccagcttcc 364
Query: 121 ctttcagagagctgacagcgttgtaggtcagccttagcctcaagttgtgcaaaagagcct 180
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 363 ctttcagagagctgacagcattgtaggtcagccttagcctcaagttgtgaaaaagagcct 304
Query: 181 ggccaaagagacatggcggtaggcccgcaggcaggctggttttaccttcaagttgatagt 240
| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 303 gtccaaagagacatggtggtaggcctgcaggcaggctggttttaccttcaagttgatagt 244
Query: 241 cacattgggggtcctcagtggggaaataaagttggggaaataa 283
||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 243 cactttgggggtcctcagtggggaaataaagttggggaaataa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space: 184676
Effective search space used: 184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no141_e18.g1 MSMg01no141_e18.g1 CHROMAT_FILE:
MSMg01no141_e18.g1 PHD_FILE: MSMg01no141_e18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:32 2005
(460 letters)
>mm_chr6_12260530_12261386
Length = 857
Score = 785 bits (406), Expect = 0.0
Identities = 446/460 (96%), Gaps = 3/460 (0%)
Strand = Plus / Plus
Query: 1 gaagttttgcatgcattataatctcctattcctaaggtcctctttatttcttgttctgat 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaagttttggatgcattataatctcctattcctaaggtcctctttatttcttgttctgat 260
Query: 61 gtttgtgctcagccacatgctatccgttggctctgcagatcattattgttttttcatttt 120
||||||||||||||||||||||||| ||||||||||||||||| || |||||||| |||
Sbjct: 261 gtttgtgctcagccacatgctatccattggctctgcagatcat--tt-ttttttcacttt 317
Query: 121 cattaatcaggtattcactaatttattattcttactatgtgttgatcatcattccaagga 180
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 318 aattaatcaggtattcactaatttattattcttactatgtgttgatcatctttccaagga 377
Query: 181 aggaataaaacagctaaggaactggcttcttccatgtatagaagaagatatggggcacca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aggaataaaacagctaaggaactggcttcttccatgtatagaagaagatatggggcacca 437
Query: 241 acaagcaaagtaaatagaaaatgagcaaataaaggaacattgtttaacattgattaaagc 300
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 438 acaagcaaagtaaatagaaaatgagcaaataaaggaacattggaaaacattgattaaaac 497
Query: 301 aatgtaaagaaagtgtgagggtagagagattacagttatggcaaacttctcagaagaggt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 aatgtaaagaaagtgtgagggtagagagattacagttatggcaaacttctcagaagaggt 557
Query: 361 gatgtatgactggagacctgcaggaagcaaggagctgcttcactttagtgaagagttcta 420
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ggtgtatgactggagacctgcaggaagcaaggagctgcttcactttagtgaagagttcta 617
Query: 421 gggaaaggtggtaaggggtggagcatctgataatagtggg 460
|||||||||||||||||||||||||||||| |||||||||
Sbjct: 618 gggaaaggtggtaaggggtggagcatctgagaatagtggg 657
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 460
Length of database: 857
Length adjustment: 10
Effective length of query: 450
Effective length of database: 847
Effective search space: 381150
Effective search space used: 381150
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
