BAC Information

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BAC

Clone NameMSMg01-141H08
Chromosome6 (Build37)
Map Location 68,004,258 - 68,004,740
singlet/doubletsinglet
Overlap geneIgk
Upstream geneE230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r, Tacstd2, Igkv2-137, 4930515G16Rik, Igkv1-136, Igkv1-135, LOC723992, EG628006, Igkv14-134-1, Igkv17-134, EG628027, LOC384401, EG628042, EG243423, EG628056, EG628072, Igkv9-129, Igkv9-128, EG243433, Igkv14-126-1, LOC723993, EG628127, ENSMUSG00000050218, EG243431, EG628144, Igkv1-122, EG667435, EG434025
Downstream geneIgkv9-119, Igkv14-118-2, Igkv14-118-1, EG384405, Igkv11-118, Igkv1-117, EG434026, EG628206, Igkv11-114, Igkv2-113, LOC232047, EG381776, Igkv14-111, Igkv1-110, Igkv2-109, Igkv1-108, Igkv2-107, Igkv11-106, Igkv2-105, LOC384408, Gm1067, Igkv15-103, Igkv15-102, Igkv20-101-2, Igkv15-101-1, Igkv15-101, Igkv14-100, Igkv1-99, Igkv12-98, Igkv15-97, Igkv10-96, Igkv2-95-2, Igkv2-95-1, EG434031, EG667550, Igkv2-93-1, Igkv19-93, Gm1408, ENSMUSG00000056850, Igkv4-90, Igkv13-89-1, Igkv12-89, Igkv1-88, Igkv13-87, Gm459, Igkv13-85, Igkv13-84, Igkv4-83, Igkv13-82, Gm460, Igkv13-80-1, Igkv4-80, Gm194, EG628498
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141H08.T7 (MSMg01no141_h08.b1)MSMg01-141H08.TJ (MSMg01no141_h08.g1)
ACCAG346326AG346327
length1,2431,256
length of high quality
(start - end)		727 (85 - 811)603 (70 - 672)
definitionCHROMAT_FILE: MSMg01no141_h08.b1 PHD_FILE: MSMg01no141_h08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:52 2005CHROMAT_FILE: MSMg01no141_h08.g1 PHD_FILE: MSMg01no141_h08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:52 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
CCTCTCTTNNNNTCCATTGGCGCTATAGACTCCTAAGGGAGAGGATCCGC
GGAATTCTTACCACACCTACTTTACCGTTATGTGCAAATATGAAGGAATT
TCCAGAAACACTCAGCTTTCATTTATCCATAGGTCCCAAATTGCATTAAC
TACTAAATGACTTTGGTTTTGCATTATACCTTCCTATGAAAGTATATATT
GATGGTATAAGAGTGAGAATTCTGCCTATTTTTTGTATTTATTGGTTATT
TTATATATTTACATTTCAAATATTATCCTCCCTTGTCAGTTTTCTATCCA
CAAGCCCCCTATCCCCTCTTCTCTCACCCTGCAACCCACCCACTCCTGCC
TAAGCAGCCTAGCTTTCCCCTATCCTGTGCAATCAAGCCTCCACTGTACA
AAGCATCTCCCCTCCCAGTGATGCAGGTAAGGCAATACTCTGCTACTTAT
CCACCTGAAGCCATAGGTACCCACTGTGTACTCTTTGGTTGGTGGATTAG
TCCCTGGGAGCTTTGATGGGTCTGGATGGAGCAATTGAGGCTAATCAGTT
CATTGTACTAAGGCTATTGTTCTCTGCTCTTATCCTCAGATGATAATTTT
TTGTCTGTCCCACAGCAAATAGTGCCCTGATCTCTATGTTATCCATAACC
TGTTCCTCCTGCTGATACTACTTCTCAGCATCCCCTCATTTGGCCTTCTT
ACTGTCCAGGAATATATCTGTGGAGGTTGCTTCTGACTTCTTGATTTGTT
TTGTTTCCTGTTTCCAGTTCTACAGTCTAGTCTAGTCTCTGACATACAGA
GTGATAGACTAGGCTTCTGCTCAAGAGCCAAGCAAGAATTACCAAAACAT
TAAATGTCATCAATGGTGGTCAAGAATGAAAGTGCTGTGAGCTTTTTATG
TGGGTAGGAATAACAAAGTGGTCTGGTTTAGCTTGGGGAACTCCCCTCCC
TGATTCCCACCAAAAACGCCCTTGCTTGATTCACAGGTTTTTTCCAAATT
TCTACTCCGGATTCCTTCAACTTCCCTCTTGCAAATCTGCTTTTCTAAAT
TTTTAAGGTGCTTTTACCTAATTTTTAGGAAGAAAGGGGTTTACTTGTAT
TTTTGGATAAAAATTGTATTTTCCCTTTTCCCCAAAAAGCCATTGAATCT
CTAAGTTTCCTTAAATTAAAATTGCTTAATTTTTGTTACTCCCCTCCTCT
TGTCCTAATAATACCTCCATCTTCTTTAAATAATATCTACTCC

TTCTTTTNNACTTGGTAGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCCTTTTAATCTTTCCAGACTTTTATCGTGAA
TTGGTGTTGGCTTTTGCCCAATGCTTTCTCACCACTAATGAGATGATCAT
GTGGTTTTTTGTTGTTGTTGTTGCTGTTTTTTGTTTTTTTTGTTTTTGTC
TTTGAGTTTGTTTATATAGTTGATTACATTGATGGATTTCCATATATTAA
GCCATCCCTGCATCCCTGGGATGATGCCTACTTGATTATGATGGATGATC
GTTTTGGTGTGTTCTTGTATTCTGTTTGCAAGAATTTTGTTGAGTATTTT
TGCATCGACATTAATAAGGGAAATTGGTCTGAAATTCTTATTCTTTCGTG
TTTCTTTGTGTGCTTTACTGTGGTAAAATACCTGGTATCTGTCTAGAAAA
TTGTCCATTTCTTCCAGGTTTTCCAGTTTTGTGAGTATAGCCTTTTGTAG
TAGGATCTGATGATGTTTTGGATTTCCTCAGATTCTGTTGTTATGTCTCC
TCTCATTTCTGATTTTCTTAATTAGGATACTGTCCCTTTGCCCTCTAGTT
AGTCTGGCTAAGGGTTTATTTATCTTGTTGATTTTCTCAAAAATCCAGGT
CCTGGTTTGGTTGTTTCTTTGTAGCGTTCTTTTTGTTTCCACTTGGTTTA
TTTCTGCCCTGAGTTTAAATATTTTCCTTCTGCCTACTCCTCTTGAATGA
ATTTGCTTTCCTTTGTTCTAGAGTTTTTATATGTGTTGTCCAGCTGCTAA
TATATGCTCTTTCTCTCTCTATTTTCTTTTCTCGGCTACTCACATCTTAT
ATTGTTTTTTCTTAAGACTTCCTTTTATTTCTCAAATTCTTTTACTTCAT
TGTTTTTTTTCCATTAATCTCAATGCCCATTTCTACTTATTCTTACCTTT
TTCTTCCTTGTTTTTCTTTCTTTTATCGTTTCCCTATTATCTTTCTCTTT
TCTTTTTTATTTATTTTTTTTCTTCTTTCTTTCATCTTCTCTTTTAAAAT
CTTCTTTCTTCTTCTCATTCATTTTTCTTTTCTTTTCCTTTAATTTTCTT
TTTATATATTTCCACCTTTTTCTTCTTTTTTCCTTCTTTTTATTTCTTTA
TTCTCTTTTTTTTCTTCTCATTTTTTCATTTCAATCTTTCCTTCATTTAT
CTTTTTCCTCTTCTTTNCTGACCTTCTTTTCAGCTTCTCTTCTTTTCACC
TTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_h08.b1 MSMg01no141_h08.b1 CHROMAT_FILE:
MSMg01no141_h08.b1 PHD_FILE: MSMg01no141_h08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:52 2005
         (727 letters)



>mm_chr6_68003613_68004740
          Length = 1128

 Score =  764 bits (395), Expect = 0.0
 Identities = 461/483 (95%), Gaps = 2/483 (0%)
 Strand = Plus / Minus

                                                                        
Query: 247  gcaacccacccactcctgcctaagcagcctagctttcccctatcctgtgcaatcaagcct 306
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1128 gcaacccacccactcctgcctaagcagcctagctttcccctatcctgtgcaatcaagtct 1069

                                                                        
Query: 307  ccactgtacaaagcatctcccctcccagtgatg-caggtaaggcaatactctgctactta 365
            |||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1068 ccactggacaaagcatctaccctcccagtgatgacaggtaaggcaatactctgctactta 1009

                                                                        
Query: 366  tccacctgaagccataggtacccactgtgtactctttggttggtggattagtccctggga 425
            ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 1008 tccacttgaagccataggtacccactgtgtactctttggttggtggtttagtccctggga 949

                                                                        
Query: 426  gctttgatgggtctggatggagcaattgaggctaatcagttcattgtactaaggctattg 485
            |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 948  gctttgatgggtctcgatggagcaattgaggctaagcagttcattgtactaaggctattg 889

                                                                        
Query: 486  ttctctgctcttatcctcagatgata-attttttgtctgtcccacagcaaatagtgccct 544
             ||| |||||| ||||||||||||||  |||||||||||||||||||||||| |||||||
Sbjct: 888  ctctttgctctcatcctcagatgatattttttttgtctgtcccacagcaaatggtgccct 829

                                                                        
Query: 545  gatctctatgttatccataacctgttcctcctgctgatactacttctcagcatcccctca 604
            ||| ||||||| ||||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct: 828  gatttctatgtcatccacaacctgttcctgctgctgatactactactcagcatcccctca 769

                                                                        
Query: 605  tttggccttcttactgtccaggaatatatctgtggaggttgcttctgacttcttgatttg 664
            |||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 768  tttggccttcctactgtccaggaatatatctttgggggttgcttctgacttcttgatttg 709

                                                                        
Query: 665  ttttgtttcctgtttccagttctacagtctagtctagtctctgacatacagagtgataga 724
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 708  ttttgtttcctgtttccagttctacagtctagtctagtctctgacatacagagtgataga 649

               
Query: 725  cta 727
            |||
Sbjct: 648  cta 646


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 727
Length of database: 1128
Length adjustment: 10
Effective length of query: 717
Effective length of database: 1118
Effective search space:   801606
Effective search space used:   801606
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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