BAC Information

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BAC

Clone NameMSMg01-141I10
Chromosome6 (Build37)
Map Location 76,648,132 - 76,648,748
singlet/doubletsinglet
Overlap genenone
Upstream geneEG668145, EG546907, LOC100042952, LOC668153, EG668155
Downstream geneLOC100042956, Ctnna2, Lrrtm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141I10.T7 (MSMg01no141_i10.b1)MSMg01-141I10.TJ (MSMg01no141_i10.g1)
ACCAG346375AG346376
length1,2821,266
length of high quality
(start - end)
614 (94 - 707)564 (83 - 646)
definitionCHROMAT_FILE: MSMg01no141_i10.b1 PHD_FILE: MSMg01no141_i10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:01 2005CHROMAT_FILE: MSMg01no141_i10.g1 PHD_FILE: MSMg01no141_i10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATCCCCTTTTNNTACACTGGGCGCTATAGACTCCTATAGGGAGAGGATC
CGCGGAATTCAGTAAGGCCATGAGATCCCTATAACGACCTTCCATAATCG
TCAGATACTGATATGTGCCTCTACAGCCCCTTAATCCGTTTGACATCAGA
CAGGTTATTTTGAGAAGTAACAGCAGCCTGCCATGAGCACCCAGATTTCA
GGGTTCAGGACCCACATAGTGAAAAGAAATACGCAGCACCCTCACATGTC
CTCTGATCTCCACATGCATATGTCTCTGTGTTTTTCAAACAAACATAAAC
CACGTTTTAATAAAGAAACACCAACAATAGCAAATAATAGAAGACTTTAA
AAAGGCAAAAGATTTAGCTCAGAGCTATACAAAAAAAAAAAATACCTGTA
ACCATGCACAATATTACTTAAGTAATCCTTCATTATAGGTGAAAGTTAAT
AAAATAGGATAATATTTAAAGATTCCTAAAATCTAAGGTGTTTGAAGCAT
ACTGTGTTGATGCGAGTATAGAAACTGAACAGTTTTGCTTTTTTTTCCTG
TGGCTACAAAAATATAAAACCATCATAGAAACACTTTGACAGTTAATTCC
ACTTTAAAGGACAAATTCTAAGGGTGTACCTGCATAAAGGGGTACAGTTA
CTCATTTTAAAATTATTTGTAAAGGCACAGGATTAACAAATTCTAAGTCA
TAGGTTGGTAAATGGGTCATAGAGCATTCAGACAATACATTATTTTGCTA
TATAGTGAAATGAAAATCATCACATGTCTTCACAGAACAGCCACAATGTT
ATATGGCTCATAGCAAAGTATATGTGAAAAGAGACAAGGTCCCGTGCACG
ATAACCTGTCAGAATATGGACTCAGCCGCACCGTAATTGTGATATCTTGA
AGAAAGCCTCCTAAGAAAAGGAAATTCCGTTCCTGGGTGAACTGGGAAAT
TTTTTTTCCTTCTTCCACCCCTTTGCAATAAATTTGTCTAATGGACCTGC
CTAATCTCAATTTGATTTATTATTAAATCCTAAAGTCTATTGTTTGAATG
TATTATTGACCTGGTTTTCTCTTCTCTTCTTTCTTTCTTTCCACCCTAGA
TTTCTTATTCTTCTTTCCTTTTCTCCCCCCCTCCCTCTATCTCACAACAA
TCTCCCCTTTGGTTGTCATTTTTACCTCTATACCTTCTTTGTCTTAAATT
TCTATCATTTCCTCTCATATCTATTATTTACTTTAATTCCTAAGTTCTCT
CTTCTCCTTTATTCCCTTCTCTATCTCATATA
CTTTTTTTAACATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCTCTTTGAATAGCTCTGTACCTCATTTTTT
AATAGGGTTATCCTTTTTTCTGGAGTCCCACTTCTTGAGTTCTTTATATA
TATATATTGAATATTAGTCCTTTATCGGATACCCAAGATAAAATTTGCAA
AAACTCATGAAATTCAAGAAGAAGGGAAACCAAAGTGTGGATACTTTGAT
CTTTCTTAGAAGGGGGAACAAAATAGCCTTGGAAGGAGTTACAGAGACTA
AGTTTGCAGCTGAGACCTAATAAAGGACTATCAATAGACTGCCCCCCAGG
GGATCCATCCCATAATCAACCACTAAACCCAGACACTATTGCATATGACA
ACTATTTTTTACTGACAGGACCCTGATATAGCTGTCTCCTGTGAGACTAT
ATACCAGTGCCTGGCAAATACAGAAGTGGATGCTCACAGTCATCTATTGG
ATGGAACACAGGGTCCCCAATGAAGGAGGTAGAGAAAGTACCCAAGAAGC
TGAAGGGGTCTGCAGCCCCATAGGAGGAAAAATATTAAGTAACCAGTACC
CGCAGAGCTCGTGTCTCTAGCTGCATATGTAACAGAGGATGGCCTAGTCA
GCCGTCAATGAGAGGAGAGGCCCTTGGTCTTGGGAAGATTCTATGCCCCT
GTATAGGGGAATGTCAGGGACAGGATGTGGTCATGGATGGTTTGATGATC
AATATGATAGTTGAGTGTCAAGCGTCATTTTCTTTATTTTTTTATTATTG
TTGTATTTTCTTCATTGTTATGTTATTATTTCTTTATTTTTTTTATCTAT
TCTTTTTTTATTTCTCTTTTTTTATCTTTACTACTTATTTTTTTTTATTC
TTTCTTTTATTTCTTTTTATTTTGTTTTCTCATTCTATTTTCTTATATAT
TTTATTTTTTCTCTTTCTCTTTATACATTCTTTAATTTTTTTTTATTTCT
ACTTTTTCCTTTATTTTATCTTTTTTCTATTTTTTTATTTATTCTTTATC
TTAATATTCCCATTCTATTCTTTTTTTTTTCATTTCTACTCATTTTTTTC
CAATATTTATTTCTTTTTCTATTTTATATTATTTCTTCTAATCTTTTTCC
TCTATTTCGTGTTGATATCATCTTATTATATTTCCCTGACATATTTCCTA
TTCTATTATCTTTCTTTCCTCTTCTTCATCCTATTATCTCTTCTCACTTT
TCTTCTGCTCTGTACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_i10.b1 MSMg01no141_i10.b1 CHROMAT_FILE:
MSMg01no141_i10.b1 PHD_FILE: MSMg01no141_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:01 2005
         (614 letters)



>mm_chr6_76647758_76648774
          Length = 1017

 Score = 1098 bits (568), Expect = 0.0
 Identities = 604/618 (97%), Gaps = 5/618 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataatcgtcagatactgatatgtgcctctacagccccttaatccgtttgacatcagacag 60
           ||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||||||
Sbjct: 991 ataatcgtcagatactgatatgtggatctacagccccttaatctgtttgacatcagacag 932

                                                                       
Query: 61  gttattttgagaagtaacagcagcctgccatgagcacccagatttcagggttcaggaccc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 gttattttgagaagtaacagcagcctgccatgagcacccagatttcagggttcaggaccc 872

                                                                       
Query: 121 acatagtgaaaagaaatacgcagcaccctcacatgtcctctgatctccacatgcatatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 acatagtgaaaagaaatacgcagcaccctcacatgtcctctgatctccacatgcatatgt 812

                                                                       
Query: 181 ctctgtgtttttcaaacaaacataaaccacgttttaataaagaaacaccaacaatagcaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ctctgtgtttttcaaacaaacataaaccacgttttaataaagaaacaccaacaatagcaa 752

                                                                       
Query: 241 ataatagaagactttaaaaaggcaaaagatttagctcagagctatac----aaaaaaaaa 296
           |||||||||||||||||||||||||||||||||||||||||||||||    |||||||||
Sbjct: 751 ataatagaagactttaaaaaggcaaaagatttagctcagagctatacaaaaaaaaaaaaa 692

                                                                       
Query: 297 aaatacctgtaaccatgcacaatattacttaagtaatccttcattataggtgaaagttaa 356
           |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 691 aaatacctgtaaccatgcacaaaaatacttaagtaatccttcattataggtgaaagttaa 632

                                                                       
Query: 357 taaaataggataatatttaaagattcctaaaatctaaggtgtttgaagcatactgtgttg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 taaaataggataatatttaaagattcctaaaatctaaggtgtttgaagcatactgtgttg 572

                                                                       
Query: 417 atgcgagtatagaaactgaacagttttgcttttttttcctgtggctacaaaaatataaaa 476
           ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 571 atgcgagcatagaaactgaacagttttgc-tttttttcctgtggctacaaaaatataaaa 513

                                                                       
Query: 477 ccatcatagaaacactttgacagttaattccactttaaaggacaaattctaagggtgtac 536
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 512 ccatcatagaaacactttgacagttaattccactttaaaggacaaattctaaggatgcac 453

                                                                       
Query: 537 ctgcataaaggggtacagttactcattttaaaattatttgtaaaggcacaggattaacaa 596
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 452 ctgcataaaggggtacagttacgcattttaaaattatttgtaaaggcacaggattaacaa 393

                             
Query: 597 attctaagtcataggttg 614
           ||||||||||||||||||
Sbjct: 392 attctaagtcataggttg 375


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 41
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1017
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1007
Effective search space:   608228
Effective search space used:   608228
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)