Query= MSMg01no141_k21.b1 MSMg01no141_k21.b1 CHROMAT_FILE:
MSMg01no141_k21.b1 PHD_FILE: MSMg01no141_k21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:21 2005
(748 letters)
>mm_chr6_110603577_110604724
Length = 1148
Score = 1384 bits (716), Expect = 0.0
Identities = 740/748 (98%)
Strand = Plus / Plus
Query: 1 tcatggcacagctgctgctgcttgttctgggccctgatgaaaggtatcagccaagccaca 60
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||
Sbjct: 201 tcatggcacagctgctgctgcttgttctgggtgctgatgaaaggtatcagctaagccaca 260
Query: 61 aagaaaggctcggtctggcagcatgactacttagaggacggtatttctatttgttgaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaaaggctcggtctggcagcatgactacttagaggacggtatttctatttgttgaaat 320
Query: 121 agtgaagcatgtttactgtgttttaagctggacttatgcaagggtggaaattcaggcaga 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 321 agtgaagcatgtttactgtgttttaagctggacttatgcaagggtggcaattcagacaga 380
Query: 181 catcgcagggaaggttctcattagaaagcccgtcctgcctctcagtttgcaggcaggagt 240
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 catcgcagggaaggttctcattagaaaacccgtcctgcctctcagtttgcaggcaggagt 440
Query: 241 agacagccaagttcaagaattgcatctaagtttacacttattatgtgtcaattttgtttt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agacagccaagttcaagaattgcatctaagtttacacttattatgtgtcaattttgtttt 500
Query: 301 cttgctgatttccttgaacatgaattacagttatcatcagtgactgtatctttcaaattg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cttgctgatttccttgaacatgaattacagttatcatcagtgactgtatctttcaaattg 560
Query: 361 gcataataaaaacattcctgggcacacaagatgacttagaaggtgtaggaactagttttc 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcataataaaaatattcctgggcacacaagatgacttagaaggtgtaggaactagttttc 620
Query: 421 agtgctgatgacatgagagatctgtgggacccactgttgatgtggagaaccaagtccaac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgctgatgacatgagagatctgtgggacccactgttgatgtggagaaccaagtccaac 680
Query: 481 gagcttttctctcacttctgcataagtaccattgcatgtacacacccacacacatacatg 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagcttttctctcacttctgcataagtaccattgcatgtacacacccacacacatacatg 740
Query: 541 tgtgcacactttatacatataataataaataaataattttaaaattgtacccatctgcta 600
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 741 tgtgcacactttatacatataataataaataaataattttaaaatcgtacccatctgcta 800
Query: 601 gaataatattgaggattacgtgtaaatggtttaatgctgactttaacatgccctgagtgt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaataatattgaggattacgtgtaaatggtttaatgctgactttaacatgccctgagtgt 860
Query: 661 tcaatgaatttcattattcttctgttttcctactttcctattttaagttttcctactgca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 tcaatgaatttcattattcttctgttttcctactttcctattttaagttttcctactgca 920
Query: 721 aaataatcataagtattaatttttctgg 748
||||||||||||||||||||||||||||
Sbjct: 921 aaataatcataagtattaatttttctgg 948
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 748
Length of database: 1148
Length adjustment: 10
Effective length of query: 738
Effective length of database: 1138
Effective search space: 839844
Effective search space used: 839844
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no141_k21.g1 MSMg01no141_k21.g1 CHROMAT_FILE:
MSMg01no141_k21.g1 PHD_FILE: MSMg01no141_k21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:21 2005
(702 letters)
>mm_chr6_110702387_110703488
Length = 1102
Score = 1168 bits (604), Expect = 0.0
Identities = 691/758 (91%), Gaps = 62/758 (8%)
Strand = Plus / Minus
Query: 7 catatgtgtgtatatatttaatacatacatata----tgtattattcaataccatatatt 62
||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||
Sbjct: 1102 catatgtgtgtatatatttaatacatatatatatgtgtgtattattcaatacaatatatt 1043
Query: 63 atagtg----------atatataatagaatgtgtggctatgtatcacaataaagtattat 112
|||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1042 atagtgatatatatatatatataatagaatgtgtggctatgtatcacaataaagtattat 983
Query: 113 atgtatatgtata-----------------------------------atatatatatat 137
||||||||||||| ||||||||||||
Sbjct: 982 atgtatatgtatatatatatatatatatatatatatatatatatatatatatatatatat 923
Query: 138 atatat------------t-actagatagtatgtattactataacactatatgtgtatat 184
|||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct: 922 atatataaatcaaatatatcactagatagtatgtattactataacactatatgtgtatat 863
Query: 185 agtattagacataatatgtactacatatattgatatataataccaaagagtaaattttat 244
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 862 agtattatacataatatgtactacatatattgatatataataccaaagagtaaattttat 803
Query: 245 gatacaaagtgacatcctccatcctggatattagcaggtaagaatttgtttgggcattta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 gatacaaagtgacatcctccatcctggatattagcaggtaagaatttgtttgggcattta 743
Query: 305 gtcttgaataaattgcatatatgatctggatttcgggtattctgaaaagaagtacagaac 364
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 742 gtcttgaataaattgcatatatgaactggatttcgggtattctgaaaagaagtacagaac 683
Query: 365 ttgacaaccctgggttgtcctacataacagcacatgcatttgagcagatgtgcagagtga 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 ttgacaaccctgggttgtcctacataacagcacatgcatttgagcagatgtgcagagtga 623
Query: 425 gtttccacaaacagacttcttgctttagagtaattctcataaatcttatcatttaaagaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 gtttccacaaacagacttcttgctttagagtaattctcataaatcttatcatttaaagaa 563
Query: 485 ggggaaactatcttcagctggattccataaagtagatggtaacatgaactctttctaaga 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggggaaactatcttcagctggattccataaagtagatggtaacatgaactctttctaaga 503
Query: 545 gtcataggatcataaaataaggcaaaatatattatatatactacacatattgatatataa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gtcataggatcataaaataaggcaaaatatattatatatactacacatattgatatataa 443
Query: 605 tcccaaagagttaattttatgcaacaaagtgacatcctccatcctggatattagcaggta 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 tcccaaagagttaattttatgcaacaaagtgacatcctccatcctggatattagcaggta 383
Query: 665 aaaatttgtttggatatttagtcttgaataaattgcat 702
|||||||||||||| |||||||||||||||||||||||
Sbjct: 382 aaaatttgtttggacatttagtcttgaataaattgcat 345
Score = 284 bits (147), Expect = 1e-80
Identities = 180/191 (94%), Gaps = 4/191 (2%)
Strand = Plus / Minus
Query: 198 atatgtactacatatattgatatataataccaaagagtaaattttatg-atacaaagtga 256
|||| ||||||| ||||||||||||||| ||||||||| ||||||||| | |||||||||
Sbjct: 469 atatatactacacatattgatatataatcccaaagagttaattttatgca-acaaagtga 411
Query: 257 catcctccatcctggatattagcaggtaagaatttgtttgggcatttagtcttgaataaa 316
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 410 catcctccatcctggatattagcaggtaaaaatttgtttggacatttagtcttgaataaa 351
Query: 317 ttgcatatatg-atctggatttcgggtattctgaaaagaagtacagaacttgacaaccct 375
||||||||||| || |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 350 ttgcatatatgaat-tggatttcgggtattctgaaaagaagtacagaacttgataaccct 292
Query: 376 gggttgtccta 386
|||||||||||
Sbjct: 291 gggttgtccta 281
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 82
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 3
Length of query: 702
Length of database: 1102
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1092
Effective search space: 755664
Effective search space used: 755664
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
