BAC Information

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BAC

Clone NameMSMg01-141N21
Chromosome6 (Build37)
Map Location 49,723,737 - 49,724,379
singlet/doubletsinglet
Overlap genenone
Upstream geneTmem176b, Tmem176a, EG666105, Abp1, 1600015I10Rik, LOC100040589, Doxl2, Svs1, Gpnmb, LOC666011, Igf2bp3, LOC100040626, Tra2a, Ccdc126, D330028D13Rik, Stk31, LOC384383, LOC666210
Downstream geneNpy, LOC100041653, LOC624524, Mpp6, Dfna5h, LOC100041681, Osbpl3, Cycs, 4921507P07Rik, LOC213320, EG666302, EG666308, EG666310, Npvf, LOC100040877
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141N21.T7 (MSMg01no141_n21.b1)MSMg01-141N21.TJ (MSMg01no141_n21.g1)
ACCAG346628AG346629
length1,1891,180
length of high quality
(start - end)		639 (130 - 768)607 (93 - 699)
definitionCHROMAT_FILE: MSMg01no141_n21.b1 PHD_FILE: MSMg01no141_n21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:46 2005CHROMAT_FILE: MSMg01no141_n21.g1 PHD_FILE: MSMg01no141_n21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCCGTCTCNNNNNNTATCATTGGGCGCTATAGACTCCTATAGGGAGAG
GATCCGCGGAATTCAACAGCCAATGGGAAACGTTTAAAAAGAGAAGAGGC
TGCCCACATCACGTGCTCTTTCCTATGGCAGTGCAATACCGCGATGAAGA
CGGGTAAACCCCCCTGGTAGCACCCGGTGATTAGCTCCCAGGACAAAGGA
GGAGGGGGGCAGAGGACTCCTCTGGGCTCGGTGGGGAGGAGAAGCAGCAG
TTTGCTAATCAGTACAATGATTAGTAAAAGCTTCCATAGATGTGGAAATG
AAAAGCACATCAGATGAGACATGACACTTCTGTAGGGCAGACAGACAGGC
TGGCCTCAGAGACAATAGCCCTAAGGGGAGCAGCCATCAAGTGCCCCCCG
CCCCCATGGCAGTGTCTACACCTACCCTGAGTTGCTTAAAGGTTCCAACC
CTCATCTTTTCCTGCCAATCCTGGCGAGGTTGACGAGCTTTGTTTTAATT
TGTACCTACATCATTCACGAACTGACTGTTTACATATTTGCTGATGGTTT
CCAGTGGCAGTAGCTGCTTCCTGGGGTCCTGTGATCGATCTTAAAGAGAC
GAATTACACTAGTCTAATGACACTGACCTCACACTGAGAAACCTTAAAAG
GGGTCGATTAAAAAAGAAATGGAAACTTGGCAGTACTAAACAATTCCACT
ATGCTGCCCTTAAAAGACTGCTTACCAGGAGTAGGTCTGGAGTCATCGAC
TAAGATCTCTCTAATAACTGGGAATTTAAAAATTCTGTTTACATCTCTGT
TTTCGCTTCTGTTGAAACAATATTTATGCCTCTCAGAAAATCCTTACAAA
TCTGAACGATTTATATTTTTTTAATACTCCCCCACCCCTTCTTCTCTCAG
TCTATTGGTAGAGGAAGCTGCTAAATTCTGTGTTCTGATGAGGTCTTCAA
ATACTTTCGGAAGCTCTCAGTAAATACTTGGTCACCCATTTTCTGTGGCA
TTTGCCCTGAATGGACCCAGTGGCCATGCTTTTGCCTGCCTTGGAAAATT
GAGTGGACAGGTTTTTACCTTAATTTGAGATTAATTTAAAGGTTCCCTTA
AAAACATTCCCTGAACTGACATTTTTGAAAAAAAAAAAATTCTCTGCTCG
TATAAGAAACAAGGTGGGGCCCTCCCTTTTTTATTTCCA

NCCCCGCGCTTTNNNNTAACATGTGAXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTATACAGCTATTAAAAA
CAAAGACATCATGAATTTTTCCCCTAAATAGATGGAACTTGCCAATATCA
TCCTATTTGAGGTAACCCAGACCCCAAAGGACATGCATGACAGAAGCCTA
GCATAACTGTCCTTTAGGAAGCTCTACCCAGCAGCTGACTGAAACAGATG
CAGACACCTACAGCCAAATATATAGGATGGAGCTTGGGGACTCTTATAGG
AAGAATTGGGGGAAGAATAGAGGGCCCTGAAAGAGACAGGAACTCCATAG
GAAGACTAACAGAGTCAACTAACTTGGGCCCTTAGGAGCTCTCAAAGACT
GATCCACTAACCAAAGAACATACAAAGGCTGGACCTATGAACCCCCTGCA
CATATATAGCAGATGAGCAGCTTGGTCTTCATGTGGGCCCTGAACAATTG
GACTGGGGGCTATCACCAAAGCTGCTGCTTGTCTGGAATATGTTCCCCTA
TCTGGGCTATCTTATCTGGCCTCAGTGGGAGAGGATGTGCCTAGCCTTGA
AGAGACTTGATGTGCCAAAATGGGGATTATATGGGGAAGGGGGCTCCACC
CTCTTAGAGGAGAAGGGGAGGGTGATGGGAGGAGGGACTGTGTATTGNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCNNNNNNTNNNNNTTTTT
TTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TNTTTTNTTTTTTTTTNTTTTNNTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTNTTNTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTT
TTNTTTTTTTTNNTTTTTTNTTTTTTTTTTTTTTTTTTTTNTNNNTTTTT
TTTNTTTTTTNTNTTTTTTTTTTTTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_n21.b1 MSMg01no141_n21.b1 CHROMAT_FILE:
MSMg01no141_n21.b1 PHD_FILE: MSMg01no141_n21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:46 2005
         (639 letters)



>mm_chr6_49723537_49724580
          Length = 1044

 Score = 1123 bits (581), Expect = 0.0
 Identities = 627/645 (97%), Gaps = 9/645 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtgcaataccgcgatgaagacgg-gtaaacccccctggtagcacccggtgattagctcc 59
           |||||||||| | |||||||| || || ||||||||||||||||||||||||||||||||
Sbjct: 843 agtgcaatactgtgatgaaga-ggtgt-aacccccctggtagcacccggtgattagctcc 786

                                                                       
Query: 60  caggacaaaggaggaggggggcagaggactcctctgggctcggtggggaggagaagcagc 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 caggacaaaggaggaggggggcagaggactcctctgggctcggtggggaggagaagcagc 726

                                                                       
Query: 120 agtttgctaatcagtacaatgattagtaaaagcttccatagatgtggaaatgaaaagcac 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 agtttgctaatcagtacaatgattagtaaaagcttccatagatgtggaaatgaaaagcac 666

                                                                       
Query: 180 atcagatgagacatgacacttctgtagggcagacagacaggctggcctcagagacaatag 239
           ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||
Sbjct: 665 atcagatgagacatgacacttctgtagggcagacagacagattggcctcagagacaatag 606

                                                                       
Query: 240 ccctaaggggagcagccatcaagtg-----ccccccgcccccatggcagtgtctacacct 294
           |||||||||||||||||||||||||     |||||| |||||||||||||||||||||||
Sbjct: 605 ccctaaggggagcagccatcaagtgccctcccccccacccccatggcagtgtctacacct 546

                                                                       
Query: 295 accctgagttgcttaaaggttccaaccctcatcttttcctgccaatcctggcgaggttga 354
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 accctgagttgcttaaaggttccaaccctcatcttttcctgccaatcctggcgaggttga 486

                                                                       
Query: 355 cgagctttgttttaatttgtacctacatcattcacgaactgactgtttacatatttgctg 414
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 485 cgagctttgttttaatttgtacctacatcattcatgaactgactgtttacatatttgctg 426

                                                                       
Query: 415 atggtttccagtggcagtagctgcttcctggggtcctgtgatcgatcttaaagagacgaa 474
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 425 atggtttccagtggcagtagctgcttcctgaggtcctgtgatcgatcttaaagagacgaa 366

                                                                       
Query: 475 ttacactagtctaatgacactgacctcacactgagaaaccttaaaaggggtcgattaaaa 534
           |||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct: 365 ttacactagtctaatgaccctgacctcacactaagaaaccttaaaaggggtcgattaaaa 306

                                                                       
Query: 535 aagaaatggaaacttggcagt-actaaacaattccactatgctgcccttaaaagactgct 593
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 305 aagaaatggaaacttggcagtcactaaacaattccactatgctgcccttaaaagactgct 246

                                                        
Query: 594 taccaggagtaggtctggagtcatcgactaagatctctctaataa 638
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 taccaggagtaggtctggagtcatcgactaagatctctctaataa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1044
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1034
Effective search space:   650386
Effective search space used:   650386
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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