Query= MSMg01no142_c23.b1 MSMg01no142_c23.b1 CHROMAT_FILE:
MSMg01no142_c23.b1 PHD_FILE: MSMg01no142_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:31 2005
(716 letters)
>mm_chr6_100670969_100672084
Length = 1116
Score = 754 bits (390), Expect = 0.0
Identities = 396/398 (99%)
Strand = Plus / Minus
Query: 319 acaatgaaatatcttttgacactagaaaggaataaatactgactgacatgtgctgtaaca 378
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1116 acaatgaaatatcatttgacactagaaaggaataaatactgactgacatgtgctgtaaca 1057
Query: 379 tgtgtggaaacagaaaacagcaaacctcaagtctttggataacttagtggatatagtttc 438
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1056 tgtgtggaaacagaaaacagcaaacctcaagtctttggataacttagtggatatagtttc 997
Query: 439 ctttaggggtggtgatgaacatgctctgtaattgaacaggggagggggcagtggttgcac 498
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 996 ctttaggggtggtgatgaacatgttctgtaattgaacaggggagggggcagtggttgcac 937
Query: 499 aatttcataaataaaccaaaaaagaaaaaagaaagaaagaaaacctgtggcattgtttgt 558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 936 aatttcataaataaaccaaaaaagaaaaaagaaagaaagaaaacctgtggcattgtttgt 877
Query: 559 gtgtctaaaagtactgggattaaaccactgttgttaagtaggtaaacaagcgcacgcaaa 618
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 gtgtctaaaagtactgggattaaaccactgttgttaagtaggtaaacaagcgcacgcaaa 817
Query: 619 cttatcacacggattttgtagaagagattttaaagtagaagagattttaaagcaggctat 678
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 cttatcacacggattttgtagaagagattttaaagtagaagagattttaaagcaggctat 757
Query: 679 ggtggtgcagcaatagcacatgtgacatgggtgagcct 716
||||||||||||||||||||||||||||||||||||||
Sbjct: 756 ggtggtgcagcaatagcacatgtgacatgggtgagcct 719
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 716
Length of database: 1116
Length adjustment: 10
Effective length of query: 706
Effective length of database: 1106
Effective search space: 780836
Effective search space used: 780836
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no142_c23.g1 MSMg01no142_c23.g1 CHROMAT_FILE:
MSMg01no142_c23.g1 PHD_FILE: MSMg01no142_c23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:31 2005
(683 letters)
>mm_chr6_100577386_100578468
Length = 1083
Score = 1187 bits (614), Expect = 0.0
Identities = 669/692 (96%), Gaps = 10/692 (1%)
Strand = Plus / Plus
Query: 1 attttccagagctggggagatgctcagtggatgaggcacttgctgcacaagcattaggac 60
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 attttctagagctgaggagatgctcagtggatgaggcacttgctgcacaagcattaggac 252
Query: 61 tggcgtctaggtctccggaacccacggacaagtcagcaggcatggaggccacctgcagtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tggcgtctaggtctccggaacccacggacaagtcagcaggcatggaggccacctgcagtc 312
Query: 121 ccttcctgtaacagctgtcccactcactgctggctccgcaacacggaacagaacaaacca 180
|||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 313 ccttcctgcaacagctgtcccactcactgccagctccgcaacacggaacagaacaaacca 372
Query: 181 gaccaccaaggcttcctctttacacatgcaaagcaaaattttcacgtactgaaattaaga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gaccaccaaggcttcctctttacacatgcaaagcaaaattttcacgtactgaaattaaga 432
Query: 241 ctccccttgcaactagaacttggggaaaaccatgtatatatttattctgaagtgtcagag 300
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 433 ctccccttgcaactagaacttggggaaaaccatgtatatatagattctgaagtgtcagag 492
Query: 301 accctatggaggcacgtatgccttctgttcaaggcggtgggggcacagaatgtgctcagt 360
|||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 493 accctatggaggcacgtatgccttctgttcaaggtggtgggggcacagaatgagctcagt 552
Query: 361 ggtgaaaccagttgtgccctcccggcccatcatgctcagccttctagcagaagtgaaaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ggtgaaaccagttgtgccctcccggcccatcatgctcagccttctagcagaagtgaaaag 612
Query: 421 aaccttagggtctagaagatacagaca--------catgctcagtaaagtgtacaacgtg 472
||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 613 aaccttagggtctagaagataaagacaggaccccacatgctcagtaaagtgtacaacgtg 672
Query: 473 tgctccatcgagtgtcggatgcgacag-tgtgtggcttccagtagactaaaactgaggcg 531
||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 673 tgctccatcgagtgtcggatgcgac-gatgtgtggcttccagtagactaaaactgaggca 731
Query: 532 cactggaaactgtcctctttcaatgtttctcattcccagctgactgacaacagctgaagg 591
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 732 cactggaaactgtcctctttcaatgtttctcatttccagctgactgacaacagctgaagg 791
Query: 592 atggctccagggaggttctatgcgctctttaaaaaaaaaccaacgaggaagaggcagaga 651
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 792 atggctccagggaggttctatgcgctctttaaaaagaaaccaacgaggaagaggcagaga 851
Query: 652 ttttgctgaggagtcagtaacagagaatacaa 683
||||||||||||||||||||||||||||||||
Sbjct: 852 ttttgctgaggagtcagtaacagagaatacaa 883
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 683
Length of database: 1083
Length adjustment: 10
Effective length of query: 673
Effective length of database: 1073
Effective search space: 722129
Effective search space used: 722129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
