Query= MSMg01no142_f05.b1 MSMg01no142_f05.b1 CHROMAT_FILE:
MSMg01no142_f05.b1 PHD_FILE: MSMg01no142_f05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:51 2005
(503 letters)
>mm_chr6_128489214_128490114
Length = 901
Score = 816 bits (422), Expect = 0.0
Identities = 483/508 (95%), Gaps = 12/508 (2%)
Strand = Plus / Plus
Query: 1 cagaaatctgcctgcctctgcctcccgaccgt--tgggattaaagatgtgcgccaccacg 58
|||||||| |||||||||||||||| || || ||||||||||| ||||||||||||||
Sbjct: 201 cagaaatccgcctgcctctgcctcctga--gtgctgggattaaaggtgtgcgccaccacg 258
Query: 59 tcgggcccaactgatttttaaaatgaccaaaagctctgaagtcaccctctcaacccagta 118
| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 259 cccggcccaactgatttttaaaatgaccaaaagctctgaagtcaccctctgaacccagta 318
Query: 119 ctcagtacatccatcccttaactcagagctcttttgtgcttcccacctgctgtgatttcc 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ctcagtacatccatcccttaactcagagctcttttgtgcttcccacctgctgtgatttcc 378
Query: 179 ggttgttccctgagagattg---tgttttactgtgtgtatttctgttgagctgaaacaga 235
| |||||||||||||| | |||||||||||||||||||||||||||||||| ||||
Sbjct: 379 gattgttccctgagag---gccttgttttactgtgtgtatttctgttgagctgaagcaga 435
Query: 236 gtactttcctactttaatctaatctcctccacctccacttctatttcgctctgtttttgg 295
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct: 436 gtactttcctactttaatc--atctcctccacctccacttctatttcgctctgtctttgg 493
Query: 296 gattccagttctgtacagttcaggtgctcaaacttgaggttaaacttgacagaaatgaag 355
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 494 gattccagttctgtacagttcaggtgcccaaacttgaggttaaacttgacagaaatgaag 553
Query: 356 caaatcatttagttgctctcaaaaccctgagacttctataatggaaacaacaaagaatag 415
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 caaatcattcggttgctctcaaaaccctgagacttctataatggaaacaacaaagaatag 613
Query: 416 aaaacagtggcctcagacttaaaatgatgccatttaatggaaggaaggaaggaaggaagg 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 aaaacagtggcctcagacttaaaatgatgccatttaatggaaggaaggaaggaaggaagg 673
Query: 476 aaggaaggaaggaaggaaggaaggaagg 503
|||||||||||||||||| |||||||||
Sbjct: 674 aaggaaggaaggaaggaaagaaggaagg 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 51
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 503
Length of database: 901
Length adjustment: 10
Effective length of query: 493
Effective length of database: 891
Effective search space: 439263
Effective search space used: 439263
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_f05.g1 MSMg01no142_f05.g1 CHROMAT_FILE:
MSMg01no142_f05.g1 PHD_FILE: MSMg01no142_f05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:01:51 2005
(650 letters)
>mm_chr6_128621411_128622460
Length = 1050
Score = 694 bits (359), Expect = 0.0
Identities = 383/391 (97%)
Strand = Plus / Minus
Query: 1 cagggctacacagagacaccctatcttgcctaaacaaaagccaaaaacacaaaaaacata 60
|||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||||
Sbjct: 591 cagggctacacagagacaccctgtcttgaaaaaacaaaagcaaaaaacacaaaaaacata 532
Query: 61 tcagaatgaatatgctgctcttcaaagttctagtgactttcaagaaacaagtgacttttg 120
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 531 tcagaatgaatatgctgctcttcaaagttctagtgagtttcaagaaacaagtgacttttg 472
Query: 121 aagcaaaaatgttaagttcaggaaatgatcccctaaatatttttagtgtgggggaccgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 aagcaaaaatgttaagttcaggaaatgatcccctaaatatttttagtgtgggggaccgtg 412
Query: 181 tcatagttgctcccagttctcatacccagtaccgtgaaggttcagtgaaagggacaaatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 tcatagttgctcccagttctcatacccagtaccgtgaaggttcagtgaaagggacaaatg 352
Query: 241 ctgcaagcagtgagcgtgatgtcatttctcttatctgagtatttttagggttacatagca 300
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 ctgcgagcagtgagcgtgatgtcatttctcttatctgagtatttttagggttacatagca 292
Query: 301 gtttaggttacactgactaatatttactggaaaatgtttactcctttaaacttatgtatt 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 gttcaggttacactgactaatatttactggaaaatgtttactcctttaaacttatgtatt 232
Query: 361 tgtcattagtgcagttaaagttgattgcatt 391
|||||||||||||||||||||||||||||||
Sbjct: 231 tgtcattagtgcagttaaagttgattgcatt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
