BAC Information

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BAC

Clone NameMSMg01-142O03
Chromosome6 (Build37)
Map Location 66,138,352 - 66,139,070
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1
Downstream geneLOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-142O03.T7 (MSMg01no142_o03.b1)MSMg01-142O03.TJ (MSMg01no142_o03.g1)
ACCAG347379AG347380
length1,2091,172
length of high quality
(start - end)		719 (90 - 808)720 (92 - 811)
definitionCHROMAT_FILE: MSMg01no142_o03.b1 PHD_FILE: MSMg01no142_o03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:08 2005CHROMAT_FILE: MSMg01no142_o03.g1 PHD_FILE: MSMg01no142_o03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGTATCNNNNNNNGTCAGTGGGCGCTAAGACTCCTAAGGGAGAGGATC
CGCGGAATTCAGGCCAGGGGTATATCCTGTATACCTCCTGAGACCAGCCA
GGAATACATAGTGAGACCTTGTCTCAATAAAAACCACAAACACTTACAGT
GGAAGGGGAGAGTAGCATGCTAGATGACAAAATAAATTTTCTTTTGTGGT
GAAAGTTTATATTCAGTATGTTTATCTGTCCTCTTCACTTACTGGTATAT
TAGATTCATATTTAATCATTTCATATTTTTCTGCATTTAAAAAATGCACA
GAATCTAGAAAACATTTCTTTGGGATCTGAGTCACTTCCAAAGTGATATT
AAATTTTATTTATGATTGCTCTTATGCTTTCGTATGATCTGCCAATGACA
TCAAGTTACAGCTCTTCTTAGCCTCACAATTCAACACAGCCCTGGGCATT
AGAAGACTAACAAAGAAGACAGACTCCATGGTGGAGTGTCTCCTCCACTG
TGGCCTGGCTCCATTATTCCAGATGGGTTTTTCTTTTGCTGTATTTCAAA
GGTCTTATCTTTCAAAAAGATAACTCAATGTTTTCCTAGATATACTTCAA
CTCTTTGGTTCCATTTGGTTTGTTTTGTCACCTATTACACTTCTGCCAGT
CCCCTGTTAGCAATCAGGCCCCTCTGGGCCTGTTAATAATAGCACTTTTC
TGTTCTGTACACTTGGCAATACAACAAAGCCTAATTTTACCCTGTTTTGT
GATGCTAGATATACCCTGGATTAGTTTTGGCCACTTTCATGAATGACCCC
CCCCCCAGACAAAATGCCAAATTCATAAAGGTTTTGTTTTTTTAGTGCCT
AAAGAGATAACCCAGTTGTTAAGAACACTAGTTGCTCTCCCTGAAAACCA
GTATTCCATTTCCATCATTCACATAGTTGCTCACAACTGGTTTATAACCC
CCGTTCCAAGGCATTCGGATAACCTCCTTCGGAACCCCTTTAGCCCCACG
TAATGGTTGGGGTTACCCCAATATCCCTTTTTCAAAAAAATAGCCCCAAT
ACACCTCTTATAATAAAAAAAATTTGCAAAAAAATGGGGCTCCAACATTT
TTTGAACAAATTTTTTTTTTTTTTGGCGCTCTAAACCACCGGTCTTTTCC
TCCCTCAGCCCTCTCTGTTCAACCCCCTCTTTACATCGTTCCTCTCTCAC
AAAACCAAC

CCACGCTTTTTTNNAAGCATGTGAGGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAACTGAGGAATACCGA
ATGGCAGAGAAGCACCTGAACAATTGTTCAACATCCTTAATCATCAGGGA
AATGCAAATCAAAACAACCCTAAGATTCCACCTCACACCAGTCAGAATGT
CTAAGATCAAAAATTCAGGTTAGGAACTTTTTGCATTTTCCATTTTCTCC
TACTGTTGTGTCAGTGTTTTCTATGGTATCTTCAGCATCTGAGATTCTCT
CTTCGATCTCTTGTATTCTGTTGGTGATGCTTGCATCTATGACTCCTGGT
TTCTTTCCTAGATTTTATATCCTCTGTGTTGTCTCCCTTTGTGATTTATT
TATTGTTTCCATTTCCATTTTTTGATCCTGGATGATTTTGTTCAGTCCCT
TCACCTGATTGTTTGTGTTTTCCTATAATTCTTTAAGGGATTTTTGTATT
TCTTCTTTAAGGTCTTCTGTCTACCTGTATTGTCTTGTATTTCTTTAAGG
GAGCTGTTTATGTCCTTTTAAAAATCCTCTATCATCATCATGAGATGTGA
TTTTTAAATCAGAGTCTTGCTTTTCTGGTGGATTAGGGTAACCAGCACTC
ACTGTGGTGAGAAAACTGGGTTCTGATACTGCCAAGTACCTTGGTCTCTT
TTGCTATGTTCCTGTGATTGCCTTTCACCATCTGGTTATCTCTTGTATTA
GCTGGTCTTATTGTCTCTGACTGTGGCTTATCTGTTCTACAAACCTGTGT
GTCAGTAGTTCTGGGAGACCAGTTCTTTACTGGAAGAATTTAAGTATGGA
GAGTTGTGTTACAGGTTCAGCTCTTGGGTGCAAACAGAGACGAGAAGTTC
CTGTCCACAGCTAATCTTTGGTTCCTGCGTCCTAATGACTCTGCGAGGCT
CACTCTTGTGCCCAAAATTTGAAAAAAAGGGGTTCTCTTAACTGGGCTTC
CCAGTGGTGTACCCCCCCCTGGAAAAACCACTTTTTTCCCGGCAATTTTT
TTTGACAAACTCCTTTGTAACCAGTCTCTTTTTTGGTCTTCACATTAGAT
ATCCTTGAAAAACTCCTTCCCTCAACCACTTCTTTCTTTTTTCTCTGCTC
CTTCCTTAATAATTACTTTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no142_o03.b1 MSMg01no142_o03.b1 CHROMAT_FILE:
MSMg01no142_o03.b1 PHD_FILE: MSMg01no142_o03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:08 2005
         (719 letters)



>mm_chr6_66138104_66139222
          Length = 1119

 Score = 1367 bits (707), Expect = 0.0
 Identities = 716/719 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gagaccagccaggaatacatagtgagaccttgtctcaataaaaaccacaaacacttacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 967 gagaccagccaggaatacatagtgagaccttgtctcaataaaaaccaaaaacacttacag 908

                                                                       
Query: 61  tggaaggggagagtagcatgctagatgacaaaataaattttcttttgtggtgaaagttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 907 tggaaggggagagtagcatgctagatgacaaaataaattttcttttgtggtgaaagttta 848

                                                                       
Query: 121 tattcagtatgtttatctgtcctcttcacttactggtatattagattcatatttaatcat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 tattcagtatgtttatctgtcctcttcacttactggtatattagattcatatttaatcat 788

                                                                       
Query: 181 ttcatatttttctgcatttaaaaaatgcacagaatctagaaaacatttctttgggatctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 ttcatatttttctgcatttaaaaaatgcacagaatctagaaaacatttctttgggatctg 728

                                                                       
Query: 241 agtcacttccaaagtgatattaaattttatttatgattgctcttatgctttcgtatgatc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 agtcacttccaaagtgatattaaattttatttatgattgctcttatgctttcgtatgatc 668

                                                                       
Query: 301 tgccaatgacatcaagttacagctcttcttagcctcacaattcaacacagccctgggcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 tgccaatgacatcaagttacagctcttcttagcctcacaattcaacacagccctgggcat 608

                                                                       
Query: 361 tagaagactaacaaagaagacagactccatggtggagtgtctcctccactgtggcctggc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 tagaagactaacaaagaagacagactccatggtggagtgtctcctccactgtggcctggc 548

                                                                       
Query: 421 tccattattccagatgggtttttcttttgctgtatttcaaaggtcttatctttcaaaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 tccattattccagatgggtttttcttttgctgtatttcaaaggtcttatctttcaaaaag 488

                                                                       
Query: 481 ataactcaatgttttcctagatatacttcaactctttggttccatttggtttgttttgtc 540
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 487 ataactcaatgttttcctagatatacttcaactctttggttccatttggtgtgttttgtc 428

                                                                       
Query: 541 acctattacacttctgccagtcccctgttagcaatcaggcccctctgggcctgttaataa 600
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 427 acctattacacttctgccagtcccctgttggcaatcaggcccctctgggcctgttaataa 368

                                                                       
Query: 601 tagcacttttctgttctgtacacttggcaatacaacaaagcctaattttaccctgttttg 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tagcacttttctgttctgtacacttggcaatacaacaaagcctaattttaccctgttttg 308

                                                                      
Query: 661 tgatgctagatataccctggattagttttggccactttcatgaatgaccccccccccag 719
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 tgatgctagatataccctggattagttttggccactttcatgaatgaccccccccccag 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 44
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 719
Length of database: 1119
Length adjustment: 10
Effective length of query: 709
Effective length of database: 1109
Effective search space:   786281
Effective search space used:   786281
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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