BAC Information

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BAC

Clone NameMSMg01-143E06
Chromosome6 (Build37)
Map Location 66,186,193 - 66,186,332
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC634745, EG667141, C130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1
Downstream geneLOC100041916, Tpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143E06.T7 (MSMg01no143_e06.b1)MSMg01-143E06.TJ (MSMg01no143_e06.g1)
ACCAG347663AG347664
length773757
length of high quality
(start - end)
66 (74 - 139)143 (75 - 217)
definitionCHROMAT_FILE: MSMg01no143_e06.b1 PHD_FILE: MSMg01no143_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:46 2005CHROMAT_FILE: MSMg01no143_e06.g1 PHD_FILE: MSMg01no143_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:03:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXCTANATACCCGAGCGGCGCGGA
ATTCTTTGTTTTGCTATGAGACCCATTTTTTAATGGGGTTATTTGATTTT
CTGGAGTTCACCTTCTTGAGTTCTTTATATATATTTGGATATTAGTCTCC
CTATCTGATCTTGGGATAGGTAAAGATCATTTCCCAATCTGTTGAGTGGT
CTTATTTGTCTTATTGACGATGTCTCTTTGCTTCGCAGAACCTTTCGCAA
TTTTATGTACGCCCCATTTACTCGATTCTCTGATCTTACTTCACAAGCCC
ATTGCGTGTTTTACTTCGCCACCCCTTTTTTTTTTTCCTATATTTTCCCT
AGCTTTGTCTTTAGCCCCTTTATCTTCTTCCCTAACCCACGCTATAAAAT
TATATATATATACTCTTATAAAACACAACAGATTTTTTTCCCCCACCACA
TGTTTTTATTTTAATACATTACCTTTATATCACACTAATATTTTTCGTTG
TGTTTCTCATTTATTTTCCGTCTTGTTTTCCCTCTATTACGACCACAGTA
TCTTTTCTTTGCCTTTATATATAATTTATATTTTTTTTCTGCTTCTCTTT
AAATATTTTTTTCCGCGTGTATAAGTAATAATTCCAACTATTACTCCTGC
ATACATCTACGCATTGTCATATCCCCCTACACCTTTACTTATATTATCCC
CTCACCTCATATTCTCATTGTGTTATTTTTCTTTACGATTTAACTCCTCT
TATTTTATTTATTCTTTCTTTAT
ACGATGATGTGAGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTTTGGATCTCTTGTGTATCTCCTTC
CTCCCTGCAGATAGCATCTGTTATGAAATAATAACGACTCTTTTTGAGGG
TGGGGATACTGGTGGGTCCCGTGAGCAATGTGACAGACCTACCTGGTATA
AAGGAGGGTTTTTTCTTGTTTGCTCTTTTTTTCCCCTCTCCCCCCCTCTA
CATACATCTATTATATATACTATTATTTTTTTTTTTTTTTTTTTTTTTCT
ATTTTTTCTTTTTCTTTTTTTTTTTTTTTTATTTTACGTTTATTTCTTTC
TCTTATTTTTTTTCTTTCTTATTCCCCTCTTCTTTTCTTCTTTCCTTTAT
TTTTCCCTTTTCACTTTTCTTTTCCCCCCCCCCCCCCGGTGTTATTTTCT
TTTTTTCTTCTTTTCCACCCCTCCCTTTTTTTTTTTTCTCTCCTTTTTCC
CTCCCTTTATTACTTATATCTCTCCTTCTTTTTTTCTTCTCTTTTTTTAA
ACTTCCCCTCCTTCTTTTCTTTCCCCCTCCCACCTTTTCTTATTTTTCTT
TCCCCACCTTTTTTTTCCCGTTCTCTCCCTCCCGTTCCGTGGCTTTTCTA
TTTTTTATATTTCTTTTCCCTTTTTACTCATTTAATTTCTCTTTTTTCAT
CCCCATTGCTCCATTTTTTCTCTATTTTATTAGTTTGCTCATATTTTATT
TTCCCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_e06.g1 MSMg01no143_e06.g1 CHROMAT_FILE:
MSMg01no143_e06.g1 PHD_FILE: MSMg01no143_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:47 2005
         (143 letters)



>mm_chr6_66185993_66186535
          Length = 543

 Score =  263 bits (136), Expect = 3e-75
 Identities = 139/140 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctttggatctcttgtgtatctccttcctccctgcagatagcatctgttatgaaataataa 60
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 201 ctttggatctcttgtgtatctccttcctccctgcagttagcatctgttatgaaataataa 260

                                                                       
Query: 61  cgactctttttgagggtggggatactggtgggtcccgtgagcaatgtgacagacctacct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cgactctttttgagggtggggatactggtgggtcccgtgagcaatgtgacagacctacct 320

                               
Query: 121 ggtataaaggagggtttttt 140
           ||||||||||||||||||||
Sbjct: 321 ggtataaaggagggtttttt 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 143
Length of database: 543
Length adjustment: 8
Effective length of query: 135
Effective length of database: 535
Effective search space:    72225
Effective search space used:    72225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)