Query= MSMg01no143_h06.b1 MSMg01no143_h06.b1 CHROMAT_FILE:
MSMg01no143_h06.b1 PHD_FILE: MSMg01no143_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:01 2005
(469 letters)
>mm_chr6_78411676_78412545
Length = 870
Score = 893 bits (462), Expect = 0.0
Identities = 465/466 (99%), Gaps = 1/466 (0%)
Strand = Plus / Minus
Query: 5 gaattcctgaattcc-taacaacaccttgagtacaaaataagattatcttgccatagata 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 gaattcctgaattccataacaacaccttgagtacaaaataagattatcttgccatagata 611
Query: 64 atcctggcattgtaattcaggggatttatgcctgtcgtgagaatgtttgcccctacaaag 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 610 atcctggcattgtaattcaggggatttatgcctgtcgtgagaatgtttgcccctacaaag 551
Query: 124 ataaaaaacatactagaatttcttaatatgatataggagaataattatctattcagaaaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 ataaaaaacatactagaatttcttaatatgatataggagaataattatctattcagaaaa 491
Query: 184 atggttaatttttagataggatgaacctaactggtgtattagctagacaagtcaatgcag 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 atggttaatttttagataggatgaacctaactggtgtattagctagacaagtcaatgcag 431
Query: 244 caaggcatttttaaccttgagttaaacaggattggattgaaatctacttggattgtgaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 caaggcatttttaaccttgagttaaacaggattggattgaaatctacttggattgtgaga 371
Query: 304 tgatcacatgttgtagtaaaaaaatagattctgggctttgttttagttttttgatgcaga 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 tgatcacatgttgtagtaaaaaaatagattctgggctttgttttagttttttgatgcaga 311
Query: 364 ggtatatctgtctacaaatggctatctttgcctatggcatgtctattcatttattcttgt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ggtatatctgtctacaaatggctatctttgcctatggcatgtctattcatttattcttgt 251
Query: 424 ttttccataaggtatcctaacttgttgggtggtagtggtgatggtg 469
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 ttttccataaggtatcctaacttgttgggtggtagtggtgatggtg 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 469
Length of database: 870
Length adjustment: 10
Effective length of query: 459
Effective length of database: 860
Effective search space: 394740
Effective search space used: 394740
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_h06.g1 MSMg01no143_h06.g1 CHROMAT_FILE:
MSMg01no143_h06.g1 PHD_FILE: MSMg01no143_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:01 2005
(346 letters)
>mm_chr6_78331035_78331781
Length = 747
Score = 582 bits (301), Expect = e-170
Identities = 304/305 (99%), Gaps = 1/305 (0%)
Strand = Plus / Plus
Query: 1 ctgtgtggtaattgtgagggatatccacacaggaaagtcacctacacttcatccatcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgtgtggtaattgtgagggatatccacacaggaaagtcacctacacttcatccatcctc 260
Query: 61 ttgccttcttctatgttgctggtgggaaaaaag-atcatggtattccatcattccctgag 119
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 ttgccttcttctatgttgctggtgggaaaaaagtatcatggtattccatcattccctgag 320
Query: 120 tgagagggtttctatttgccaggaggctctcaattatgatagtaagcatgtaggagagga 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgagagggtttctatttgccaggaggctctcaattatgatagtaagcatgtaggagagga 380
Query: 180 gaagaaatatgtgagtcactaatgaagcatgcaagtagaccttggggagaatggagtatc 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaagaaatatgtgagtcactaatgaagcatgcaagtagaccttggggagaatggagtatc 440
Query: 240 acagacagtgaaatgtgtagaaagagtaaaatgaaaggaagctctttcacactatatata 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagacagtgaaatgtgtagaaagagtaaaatgaaaggaagctctttcacactatatata 500
Query: 300 tatat 304
|||||
Sbjct: 501 tatat 505
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 747
Length adjustment: 9
Effective length of query: 337
Effective length of database: 738
Effective search space: 248706
Effective search space used: 248706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
