BAC Information

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BAC

Clone NameMSMg01-143H09
Chromosome6 (Build37)
Map Location 117,967,448 - 117,967,566
singlet/doubletsinglet
Overlap geneRasgef1a
Upstream geneCxcl12, LOC213422, EG640142, LOC100043777, LOC621462, EG640370, EG621705, LOC100043779, Zfp637, Zfp239, 4933440N22Rik, Hnrpf, Fxyd4, LOC232338
Downstream geneGalnact2, Ret, 1700069P05Rik, Bms1, Zfp248, Zfp9, Ankrd26, Cacna1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-143H09.T7 (MSMg01no143_h09.b1)MSMg01-143H09.TJ (MSMg01no143_h09.g1)
ACCAG347801AG347802
length756709
length of high quality
(start - end)
118 (62 - 179)636 (74 - 709)
definitionCHROMAT_FILE: MSMg01no143_h09.b1 PHD_FILE: MSMg01no143_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:02 2005CHROMAT_FILE: MSMg01no143_h09.g1 PHD_FILE: MSMg01no143_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:02 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATATTTGCGGCGCTATACGACTCCTTTTCGCATGGATCCGCGGAATTC
TTGGTCTCACCTGGCTTCTGAAATCTAGGGCCAACTGTGATTAGAGAAAA
TGGCAGGGGCCTAGGGGACCCTGGGCCAGGTGGAAAGAATGGGGTGGGGG
GAGAAAGAGCCTCCAAGATGGCTAAGTTGTATAAGGAAGAAAGGATGAAG
GTAGGAGGTTATACTTTCTTTTTTTCCTCTCCCTTCCTTCCTTTTTTTTC
CTTTCTCCCCCACTCCATTTTTCACTCCCCTTTCCCACCCTTCCCTCTTT
CCCCCCTACCTTTTTTTTTTTTTTTCCTTCCACTTCCTCCCCCTTTATTT
TTTTCTTTTTATTCCCCCCTCTTTCTTCCTTCTATTTTCTCTTTTTTTTC
TTTTCTTCTTTTGTTTGTACAACCCCCCNTATATTATTTTTTTTTTTTTT
TTCGTCTTCCTTCTTTCCTTCCTCCTTTTCTCCTCCTTCCTTTCACTTCT
TCTTTTTTTCTGCTCGTTTACCTCCTTCACCACCGCTTTTTTTTCTTTTT
ATCTTCTTTTTCTTCATATTCCTGATTACCTCTCTTCTCTTATTTCTCTC
CTTCTTTTCTCTCCTTCACCTCTTTTTTTTTCTTCTTTTTTCTTTCTGTC
ACTTCATCATCTTTCTTTTCTTATTTCTCTTTTCTTTCCCTCTTAGTTCT
TTCCTCTCTCCCCTCCCCTCCACCTTCTTTTCTCTTATTTCTTTTCCCTT
TTTCTG
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGTTCCAGGGATCTAACTCCCACTTC
TGACTTCCATGGGCACCAGGCAGAACACACAGTACACATACATACATGCA
GGCGAAGCACTCATATATATAAAATAAGAGAATAATAAATCATTTTAATA
GATATTCCCAAAGATGCAGCAGTGGCACTTATATTTTAGGGATAGCCAAC
AACCATCTGAATGGATTTACAAACCAAACAAAAGAATAGATTACATATCT
GATACTATAAGCCTATCTGTGACCAGCAAGTCCATGGATCATAGATAACT
TAGTAGTGTCATGTTCCCTAAAACAGTATAATTTGTAACAGCGTTCTTGT
TTTTAAGATTTACCCAACTTTTTATGTATATGAGTCTATTGTAGCTGTCT
TCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCTACCCTGTG
GCTGCTGGTAATTGAACACAGGACCTCAGGAAGAGCAGTCAGTGCCCTTA
ACTGCTCTCTCCAACCCCCTCTAACAGCATTCTTACTACTTATCCTTAAA
CACATAAATAAGTGTGCTCTCATCCTTCATCCTGGGAGTTTCTTTTGCAG
CAGAGACAATTACAGAAAGCCACAACTGGTCAAAATGCAGAGAACTGCTT
ACCACAGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no143_h09.b1 MSMg01no143_h09.b1 CHROMAT_FILE:
MSMg01no143_h09.b1 PHD_FILE: MSMg01no143_h09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:02 2005
         (118 letters)



>mm_chr6_117967248_117967766
          Length = 519

 Score =  223 bits (115), Expect = 4e-63
 Identities = 118/119 (99%), Gaps = 1/119 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggcttctgaaatc-tagggccaactgtgattagagaaaatggcaggggcctaggggacc 59
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 tggcttctgaaatcatagggccaactgtgattagagaaaatggcaggggcctaggggacc 260

                                                                      
Query: 60  ctgggccaggtggaaagaatggggtggggggagaaagagcctccaagatggctaagttg 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ctgggccaggtggaaagaatggggtggggggagaaagagcctccaagatggctaagttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 118
Length of database: 519
Length adjustment: 8
Effective length of query: 110
Effective length of database: 511
Effective search space:    56210
Effective search space used:    56210
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)