Query= MSMg01no143_k03.b1 MSMg01no143_k03.b1 CHROMAT_FILE:
MSMg01no143_k03.b1 PHD_FILE: MSMg01no143_k03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:14 2005
(347 letters)
>mm_chr6_54481781_54482527
Length = 747
Score = 617 bits (319), Expect = 0.0
Identities = 343/355 (96%), Gaps = 8/355 (2%)
Strand = Plus / Plus
Query: 1 tgtgaggggctagctctggaattttgtaccacgcctgtgtcatcataccccagacctccc 60
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||
Sbjct: 193 tgtgaggggctagctctggaatttcgtaccacgcctgtgtcatcatatcccagacctccc 252
Query: 61 tgcttcttctctgtcactttcagtcgtccttagatttgtgctgttcacttaaaattgaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tgcttcttctctgtcactttcagtcgtccttagatttgtgctgttcacttaaaattgaca 312
Query: 121 ttcacacgggtga----a----tcccgttaaattttatactttcagtattgtttatattt 172
|||||||||||| | ||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttcacacgggtgctgtgacccttcccgttaaattttatactttcagtattgtttatattt 372
Query: 173 tactcactgatccatcactgaaacgaaaaataattcatggcagaatcagatccaattttt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tactcactgatccatcactgaaacgaaaaataattcatggcagaatcagatccaattttt 432
Query: 233 tatatcctcattcaaacttaatcctaacaatataacagcggttcccaatctgtgggtctc 292
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 433 tatatcctcattcaaacttaatcctaacaatataacagtggttcccaatctgtgggtctc 492
Query: 293 catcccttttgagctcaaacgaccctttcaggtatcctgcatatcaggcatttac 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 catcccttttgagctcaaacgaccctttcaggtatcctgcatatcaggcatttac 547
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 347
Length of database: 747
Length adjustment: 9
Effective length of query: 338
Effective length of database: 738
Effective search space: 249444
Effective search space used: 249444
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no143_k03.g1 MSMg01no143_k03.g1 CHROMAT_FILE:
MSMg01no143_k03.g1 PHD_FILE: MSMg01no143_k03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:14 2005
(142 letters)
>mm_chr6_54625587_54626128
Length = 542
Score = 265 bits (137), Expect = 8e-76
Identities = 140/141 (99%)
Strand = Plus / Minus
Query: 1 tggattacaaggaggattttggggcatactctgtcatgagcatggcgtggagatgctaag 60
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 tggattacaaggaggattgtggggcatactctgtcatgagcatggcgtggagatgctaag 282
Query: 61 gagcaagcccttgcctctttatgaagcttcatgggtaactgtgtcacacatgcccactgg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 gagcaagcccttgcctctttatgaagcttcatgggtaactgtgtcacacatgcccactgg 222
Query: 121 aagatccctgtctaggaagaa 141
|||||||||||||||||||||
Sbjct: 221 aagatccctgtctaggaagaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space: 71556
Effective search space used: 71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
