Query= MSMg01no144_n14.b1 MSMg01no144_n14.b1 CHROMAT_FILE:
MSMg01no144_n14.b1 PHD_FILE: MSMg01no144_n14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:47 2005
(344 letters)
>mm_chr6_27155665_27156408
Length = 744
Score = 638 bits (330), Expect = 0.0
Identities = 339/342 (99%)
Strand = Plus / Plus
Query: 1 caattaaacgaaattactagacaccttaatggaaaccctaagaagttagtagtcttactg 60
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caattaaacgaaattactagataccttaatggaaaccctaagaagttagtagtcttactg 260
Query: 61 acattcaagaatattgaggagggaaacatgatatcattctccatgtgttcagtaagaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acattcaagaatattgaggagggaaacatgatatcattctccatgtgttcagtaagaata 320
Query: 121 atttaacaacatggaagaccaagtcatacagcaatacaaggcagagatcagagtctatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 321 atttaacaacatggaagaccaagtcatacagcaatacaaggcagagatcagggtctatag 380
Query: 181 caagcttcatttgggcattgacaagggggtgtattaagggactggcttcacagatgcaag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagcttcatttgggcattgacaagggggtgtattaagggactggcttcacagatgcaag 440
Query: 241 gagcaaagtaaagtctgagacactgttaggatagttttgtaaattatggctattgagata 300
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 441 gagcaaagtaaagtctgagacactgttaagatagttttgtaaattatggctattgagata 500
Query: 301 acatgggcaaaataatgatgtttaccaatcaatattttgcag 342
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acatgggcaaaataatgatgtttaccaatcaatattttgcag 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 344
Length of database: 744
Length adjustment: 9
Effective length of query: 335
Effective length of database: 735
Effective search space: 246225
Effective search space used: 246225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no144_n14.g1 MSMg01no144_n14.g1 CHROMAT_FILE:
MSMg01no144_n14.g1 PHD_FILE: MSMg01no144_n14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:05:47 2005
(595 letters)
>mm_chr6_27260525_27261519
Length = 995
Score = 1000 bits (517), Expect = 0.0
Identities = 544/563 (96%), Gaps = 16/563 (2%)
Strand = Plus / Minus
Query: 1 ctctaattgtttgaaatattctttcaaagattaatatatataggagggatttaagcttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctctaattgtttgaaatattctttcaaagattaatatatataggagggatttaagcttat 504
Query: 61 ttctaattgttgatggaagtaccattaccaaagagataatctggtctaagttagagttga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttctaattgttgatggaagtaccattaccaaagagataatctggtctaagttagagttga 444
Query: 121 atagttcagtgatttttcatatcctgattgatatgaattatctttgtggctttcaacata 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 atagttcagtgatttttcatatcctgattgatatgaattatctttgtggctttcaacata 384
Query: 181 taacccaactgcttatcaaaataaaactatctttaattcttaaagtagaaacctaacagg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taacccaactgcttatcaaaataaaactatctttaattcttaaagtagaaacctaacagg 324
Query: 241 aatgttccagagttagagatttcttgaagtcgttaatatatcatgcaggctccataaaaa 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aatgttccagagttagagatttcttgaagtcgttaatatatcatgcaggctccataaaaa 264
Query: 301 gtgatagctgcctgagtttgagtctcactgaaagcagaagcctgacgcaaaaaaaaaaaa 360
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 263 gtgatagctgcctgagtttgagtctcactgaaagcagaagcctggggcaaaaaaaaaaaa 204
Query: 361 aaa----------------gtgaacccaaggtactaagaaggaaatactggaagcaagtg 404
||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 aaaaaaaaaaaaaaaaaaagtgaacccaaggtactaagaaggaaatactggaagcaagtg 144
Query: 405 ggtggggggagcaatgaggtgcagcaggaaacaggaacatcagcatagtgcatattcaat 464
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 143 ggtggggggagcaatgaggtgcagcaggaaacaggaacatcagtatagtgcatattcaat 84
Query: 465 cagatgtcagcctctctaggcttcctctacctatctgtgtgagtcacaaaagaccagagc 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83 cagatgtcagcctctctaggcttcctctacctatctgtgtgagtcacaaaagaccagagc 24
Query: 525 ttttagccacagcacagttactt 547
|||||||||||||||||||||||
Sbjct: 23 ttttagccacagcacagttactt 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 595
Length of database: 995
Length adjustment: 10
Effective length of query: 585
Effective length of database: 985
Effective search space: 576225
Effective search space used: 576225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
