Query= MSMg01no145_g06.b1 MSMg01no145_g06.b1 CHROMAT_FILE:
MSMg01no145_g06.b1 PHD_FILE: MSMg01no145_g06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:27 2005
(565 letters)
>mm_chr6_3975148_3976112
Length = 965
Score = 948 bits (490), Expect = 0.0
Identities = 535/562 (95%), Gaps = 20/562 (3%)
Strand = Plus / Plus
Query: 4 ggaattctttccagtgccttaagggcatgtcacaacccctgtcatttatgcttctattct 63
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttccagggccttaagggcatgtcacaacccctgtcatttatgcttctattct 263
Query: 64 aagggatatctccaaccatccagtaatacatttcctctttcataaactcatagtagcttt 123
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aaggaatatctccaaccatccagtaatacatttcctctttcataaactcatagtagcttt 323
Query: 124 tctttttcctctaaagtaaaagcaagccacttagtgtgtggctgcatggttaacaccata 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tctttttcctctaaagtaaaagcaagccacttagtgtgtggctgcatggttaacaccata 383
Query: 184 gtttgaacctactactgtgttagaatgttctcgcttgttcttctgtgtatgtctcaaggg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtttgaacctactactgtgttagaatgttctcgcttgttcttctgtgtatgtctcaaggg 443
Query: 244 aaaggggttgagtgtgtgctgctgatcaatagccaaggaagccaattaaagcttagaaaa 303
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 aaaggggttgcgtgtgtgctgctgatcaatagccaaggaagccaattaaagcttagaaaa 503
Query: 304 gcctaccagccacaatggtagtgttcagtcagtcagtcaatcagacagacagtcagtcag 363
|||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct: 504 gcctaccagccacaatagtagtgttcagtcagtcagtca------------gtcagtcag 551
Query: 364 tcactcagccacccagtcagtcagtcagtcagaaaccctgtcttttctcctctcatcctt 423
||| |||| ||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 552 tcagtcag--------tcagtcagtcagtcagaaatcctgtcttttctcctctcatcctt 603
Query: 424 acttgtcctagtggtcctgagatcaggtcagaatacagaccaatccagagcacagtaaaa 483
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 604 acttgtcctagtggtcctgagatcaggtcagaatacagaccaatcaagagcacagtaaaa 663
Query: 484 atttttggattaatccaatattaaaattacttcccagctgtaaaggttaattatggtcag 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 atttttggattaatccaatattaaaattacttcccagctgtaaaggttaattatggtcag 723
Query: 544 cctgtcataggtaaaggtcatc 565
||||||||||||||||||||||
Sbjct: 724 cctgtcataggtaaaggtcatc 745
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no145_g06.g1 MSMg01no145_g06.g1 CHROMAT_FILE:
MSMg01no145_g06.g1 PHD_FILE: MSMg01no145_g06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:28 2005
(554 letters)
>mm_chr6_4120173_4121126
Length = 954
Score = 971 bits (502), Expect = 0.0
Identities = 544/564 (96%), Gaps = 10/564 (1%)
Strand = Plus / Minus
Query: 1 attatgccaagaaagcaggggatggaaggtttgaagtagattttgaaa----------tc 50
||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct: 812 attatgccaagaaagcaggggatggaaggtttgaagtagatattgaaatcttaagaattc 753
Query: 51 ttaaggagagcaagacatattccatgacaaattaggcaaatcaagtgtttggacacaaaa 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 752 ttaaggagagcaagacatattccatgacaaattaggcaaatcaagtgtttggacacaaaa 693
Query: 111 caatagcagatctttttgaatgcttcacaagagagaaaggggttgggtgtgagtcccaga 170
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 caataacagatctttttgaatgcttcacaagagagaaaggggttgggtgtgagtcccaga 633
Query: 171 ctcattgtgacttataaagagaacacaggaccaactttctgcttgtatatcacgagctta 230
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ctcattgtgactgataaagagaacacaggaccaactttctgcttgtatatcacgagctta 573
Query: 231 tcagtgttcgcatcatgtcctcctcatccattttatgtaaaagagacatgcacaaagggt 290
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 572 tcagtgttcgcatcatgtcctcctcatccattttatgtaaaagagacatgcgcaaagggt 513
Query: 291 caaagtaaatgtggtcactctatgacagattttccatctttaacctttacagcaacgtca 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 512 caaagtaaatgtggtcactctatgacagattttccatctttaacctttacagcaatgtca 453
Query: 351 gcttcctgatagattgtctggtagaggtgtaggcttccatgtggagtcttaaggaagggt 410
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct: 452 gcttcctgatagattgtctggtagaggtgtaggcttccatgtggagtcttaagtaaggat 393
Query: 411 ttggagaggaaccagtgctctgagtgactgggctgctcataagattgctaaaataatctt 470
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ttggagaggaaccggagctctgagtgactgggctgctcataagattgctaaaataatctt 333
Query: 471 aggaacgtaatggctctggctttgcatttgctctcttctttgttctgcaatcacttacca 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aggaacgtaatggctctggctttgcatttgctctcttctttgttctgcaatcacttacca 273
Query: 531 gagccttttgtctcatacatagaa 554
|||||||||||||||| |||||||
Sbjct: 272 gagccttttgtctcatccatagaa 249
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space: 513536
Effective search space used: 513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
