BAC Information

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BAC

Clone NameMSMg01-145J08
Chromosome6 (Build37)
Map Location 87,176,984 - 87,177,375
singlet/doubletsinglet
Overlap geneAntxr1
Upstream geneTgfa, LOC665233, LOC100043094, LOC100043527, 2010309E21Rik, Snrpg, Pcyox1, Tia1, C87436, 2310040G24Rik, Pcbp1, Asprv1, Mxd1, 2610209M04Rik, Gmcl1, Anxa4, 2610306M01Rik, Aak1, LOC100043555, Nfu1, Gfpt1, D6Ertd527e
Downstream geneGkn1, Gkn2, 1190003M12Rik, Bmp10, Arhgap25, Prokr1, 2010301N04Rik, 1810020O05Rik, AB041550, LOC100043118, EG545864, Gp9, Rab43, Isy1, Cnbp, Copg, 8430410A17Rik, LOC665416, H1fx, EG434064, LOC100043131, Rab7, Rpn1, Gata2, Dnajb8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-145J08.T7 (MSMg01no145_j08.b1)MSMg01-145J08.TJ (MSMg01no145_j08.g1)
ACCAG349348AG349349
length697703
length of high quality
(start - end)
343 (70 - 412)475 (74 - 548)
definitionCHROMAT_FILE: MSMg01no145_j08.b1 PHD_FILE: MSMg01no145_j08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:43 2005CHROMAT_FILE: MSMg01no145_j08.g1 PHD_FILE: MSMg01no145_j08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:06:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXTCATGAGCTGCGCGGAAT
TCCACAACCTTCCAAAAAGACCTCCTTCTTTTGAAGCTACCACCTCAGTC
TGTGAAACTTGTCACACAGATTCTACTGGGCTTGCTTAGTATGGCAAGTT
GTAAAAGAAACTTTTATTCTCCTGAAGTAATTGTTGTCACTGAGGTTAGC
CTCCATCTGCTAACCTAGGTCTCGTCCTGGAAGCTTCTAGTCTCTGTACA
ATCTAATCGAGGCCTAGAATGTTTTCTAGGCTGACTGATTCAAACTGGCT
TCTCTCTGCCTCTCCTGTATTTGTTCTTTTTGGCCTCATAGCAATTTTGG
CAATCTGTTCTAATCTTCTGGCTCCTTCTCCTTCTCTGATTTGTTCTGTC
TTCACCTGGCTCCCACCCCTGTTCTGTCTCTGCAACCTGTCTCACTCCTA
ACTGTTCCAGGAAAGCTGCCTTCAAATTCCAGGAACTCAACTCCCGGTCT
GCCTCTCAACTCCCTGACAACTGAGCTCACTGAACAGAACTGATTAGCGC
TCAGAGTTCTGCGTGCCTCTTGTCTCCTGAGTGCTGCTTAAAGGCCTGTG
CCCCCACATCTGGATGTAAACCTTTCTTTGTCTGAAACTTGTTTTGTACC
AGGCTGACCTTGAACTTAGATCTTGCTAATCTCTGTCTTCTGAAATT
NCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATTTCTTCCTATCTATCCATAGTTA
AGTCACTGTTCTCAGTCATTCCTTTGGACAAGTCATTCCATTTGAAACAC
TGTACTGTGCCTAAAAGGAGAAAAGAGACCAAATCGGATGTCCACTCAGG
AAGCCCCCTCACGGAGAAAGAATCCCTGTAAGACAGCATTTTCAACCTGT
GGGGCAAAGACTCTTTGCACAGCAGATCTTCACACTGTGATCTAGAACAG
TAGCAAAATTACAGATATGGAGTAGAAACGAAATAGTCGGATGGTTGGGG
TCACTGCAACATGAAGAATTGTATTTAAGGGTCTCAGTATTAGGGTATTG
AGAACCGCTGTTGTAACACACACAAAATCCAGAGACAGAATTAATGTAAG
CACAACCCCTAGAGGTCGGCGGTGACACCCTCTGCTCTGTCTTCCCCGTC
CAGCTACGTGGTTTGTGATTGCAAAGTCTTCTGTATCTTTGGAGTGCCTT
AGGAAGGCCAAGCACATAGTAGTTGCTTTATGTGTTAGAGACTTTTTGTC
TTAATCCGGACCCAAAATCAGTTGTCCAGGCAATGAAGGTTAGAAAAGAA
ATTTCAGGAACAAACCTGCCAACATAGTGGAAGAGGCATCAGCACCATCT
CCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no145_j08.g1 MSMg01no145_j08.g1 CHROMAT_FILE:
MSMg01no145_j08.g1 PHD_FILE: MSMg01no145_j08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:06:43 2005
         (475 letters)



>mm_chr6_87176984_87177858
          Length = 875

 Score =  646 bits (334), Expect = 0.0
 Identities = 379/394 (96%), Gaps = 4/394 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatttcttcctatctatccatagttaagtcactgttctcagtcattcctttggacaagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 tcatttcttcctatctatccatagttaagtcactgttctcagtcattcctttggacaagt 333

                                                                       
Query: 61  cattccatttgaaacactgtactgtgcctaaaaggagaaaagagaccaaatcggatgtcc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 332 cattccatttgaaacactgtactgtgcctaaaaggagaaaagagaccaaatcggatgtac 273

                                                                       
Query: 121 actcaggaagccccctcacggagaaagaatccctgtaagacagcattttcaacctgtggg 180
           |||| |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 272 actctggaagctccctcacggagaaagaacccctgtaagacagcattctcaacctgtggg 213

                                                                       
Query: 181 gcaaagactctttgcacagcagatcttcacactgtgatctag-aacagtagcaaaattac 239
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 212 gcaaagactctttgcacagcagatcttcacactgtgatct-gtaacagtagcaaaattac 154

                                                                       
Query: 240 agatatggagtagaaacgaaatagtcggatggttggggtcactgcaacatgaagaattgt 299
           |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 153 agatatggagtagaaacgaaatagtcggatggtt-gggtcactacaacatgaagaattgt 95

                                                                       
Query: 300 atttaagggtctcagtatta-gggtattgagaaccgctgttgtaacacacacaaaatcca 358
            ||||||||||||||||||| ||| |||||||||||||||||||| | ||| ||||||||
Sbjct: 94  gtttaagggtctcagtattagggggattgagaaccgctgttgtaagatacagaaaatcca 35

                                             
Query: 359 gagacagaattaatgtaagcacaacccctagagg 392
           ||||||||||||||||||||||||||||||||||
Sbjct: 34  gagacagaattaatgtaagcacaacccctagagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 475
Length of database: 875
Length adjustment: 10
Effective length of query: 465
Effective length of database: 865
Effective search space:   402225
Effective search space used:   402225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)