BAC Information

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BAC

Clone NameMSMg01-146D05
Chromosome6 (Build37)
Map Location 98,347,666 - 98,348,239
singlet/doubletsinglet
Overlap genenone
Upstream geneFrmd4b, LOC641241, LOC100043692, Mitf, Gm765, LOC666019
Downstream geneLOC665963, LOC665979, Foxp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146D05.T7 (MSMg01no146_d05.b1)MSMg01-146D05.TJ (MSMg01no146_d05.g1)
ACCAG349802AG349803
length1,2011,214
length of high quality
(start - end)
690 (130 - 819)733 (92 - 824)
definitionCHROMAT_FILE: MSMg01no146_d05.b1 PHD_FILE: MSMg01no146_d05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:41 2005CHROMAT_FILE: MSMg01no146_d05.g1 PHD_FILE: MSMg01no146_d05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:07:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCATCTAGTTNNNNTTCAGTGGGCGCTATAXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCCACAGTTATCGGAACACCTATAATTTGTGCAAAAGTT
CAGAGAAAAACCTCTGAGCTCCTTAAAATGTTGTGAAGCCATTTTTTTTT
TTTCAGGGAGAAGTCCATGAAGTTTTACAGGTGAAATGTAAGTGACAGTA
AAGATCCCAGGTTGAAGATGCCAGCAAATTGAATCATATCCTGGGAAAGC
ATAAGGTGCCAATCGGGGTTGGTAGGGGAGAGGCTACACATATTACAAAC
ACCAGGGCTGTGAGGATAGGTTAGCAAGCCCATTGTATAACGTGCCATGA
TATCCAATCTTTCAGATTCTGGGCATACATCTTCTGGAGCTCATGTTTGC
TTAAAACTGGTGTAATATTCACTTGCTATGCCTATCTCTTCCCTTTGCAG
TGGAGATGCTTTTCCTGAACTGTATATTGCAGTTATGTAACCGGATTTTT
AAAATTACAAAGATACAGCTAAGAGTTCTCTTGGAGTATCAGTAGAGACT
TTGGGAACTTTGATGCTGAATTAGTGGGAGGTGGCATCACGAGGTGGCTA
TAAGTCTCTGGAGGCCAGAGGTTAAATGTTATGGGTTGAATCTGAAATGT
TTTCCACAGATTCATATTTTGAACACTTGGTCCCCAACTTATGGCACATT
TTCTTAAGGCCGAGGAACCTTTAGTAAATAGTGTTTGGCTCACAGAGCTA
GGTTCCTGGAGATGGGTCTTTGAAGCTTACGTTTTTCTCTGGTTCTTGCT
TGTGTTCTCTGTTTTGTCCTGTGTGAATAGCTCCCACCTCACATTCCTGT
AAACATAGCTGCTCCACACTCCCGTGCCTACCCATAGGTGATAGAGTGAA
ATCTTTATGAAATTCTGATCCCAAAAAACATGCTTTCTCTTAAATTGTTT
TGGTCCCTTTTGAGAAAAGTAAACAACACCTCTACCCTAAAGAACCAAAC
TTCTCAATCAGAATAAAAGAAGCCCCACCCTTGTCCCAAGCCTTCATTTT
TAAAAGAAACCCAGTTTAAGGCTCTTCTTTTTCCATCTTTCTGAACCCCC
ATCATTACCTTCTTTGCCGGGATTGGTCCCCCCTAAAAAAAATTGTCTAA
TATAAACCCCCCTCGAAAAAATAAATTCTTTTCCCTAAAATTTTCTTAAA
N
NCCCTTTCTTTTTTTTAAGATGGCAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAACTCCTACCCTCCCC
GAGCTGCAACAAAGCACAACCTTTTCCCTGCTGGGATACCGCCTAAGAAA
GGTTAGAGTTTTCATCTCTGCTAGGTAACAACAAGGTGCTTGCTCCACTG
TGAGGTCACTAGTGGCCATAGCTATAAAAGTAACAAGACATACCCCATCT
AGAGAAGTATCAATGGAAGTCTAGTAGGGCATGGAAATCTCACTGTTACC
CAGAAGCAAGAAATATCTCTCCTAACCTCGATATCAACAAAGAGCATACA
CATCATGCTGTACCTCTACCCAATCCTGGTAGCATTAAGTAGTTCATTCA
TCTGCCAGCTGCTGGACTGGCACCAGACTAAAGTGACCAAAAATCTATAG
ATTTATTATTCAGAATCTGAAAAGATTTTAAGGCTATCTTCATAAAATTG
CTTCAGCAAACAATTATGTATACCACTACAAGCATTTTTTTTAAAAAAAA
TATTAAAGTTCTCATCAGAGTGATGGGCTAAGAAAATCCAAATGGAAAAT
TTTGAACTGAAAAGTACAATAACTGAAGTGGAAACCTCATGTAAAGGCTC
AGGGCAGGAAGAAGAGTGTCCTAGGAAGGTCAGAGAACTTGACAGGAGAT
CAAAAAATTCTGATCAAGTGGGGAACAGAATGAAATAACAGAATCAGAGT
GTCAAGAATACATTGCGCCACAATTAAGTGTCTAATTGTGTAACATCAGA
ATCCTAGAAGGAGAGAAAGAAATAGGGTTGAAAAGGGCCCAAGAACATAA
CAATTCAACTGCCTGATTCAGCAGAAAATAGCAACATGTAGAATCCAGAA
GCATAAAAAATTTATTTAAAGAGAAGCCTAATGAAATATACTCATACCCA
TAAATATACATACCCTTACCCACTTGGAAATATACACCATCACATACCCA
TATTTACATACCCCCATACTTGCTTGTAAATCAAAACGCAAAACTCCCTT
TAAACCCCCTTCCTTACCCCCCTTATTTACCCCCACCTTACCTGTTTTAC
CCCCTTATTCCTTTTACCGAAAAATGGGTTAACCCGAAACCCCTCTCCTT
ACACCCCTATAAAATATCTCCTACGTTACCTTAGTGATACTCCCCCTTTT
TATTTGGCAAATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_d05.g1 MSMg01no146_d05.g1 CHROMAT_FILE:
MSMg01no146_d05.g1 PHD_FILE: MSMg01no146_d05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:07:41 2005
         (733 letters)



>mm_chr6_98347666_98348799
          Length = 1134

 Score = 1002 bits (518), Expect = 0.0
 Identities = 562/580 (96%), Gaps = 11/580 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   accctccccgagctgcaacaaagca---caaccttttccctgctgggataccgcctaaga 57
           |||||||||||||||||||||||||   ||||    ||||||||||||||  ||||||||
Sbjct: 574 accctccccgagctgcaacaaagcacagcaac---atccctgctgggatagtgcctaaga 518

                                                                       
Query: 58  aaggttagagttttcatctctgctaggtaacaacaaggtgcttgctccactgtgaggtca 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aaggttagagttttcatctctgctaggtaacaacaaggtgcttgctccactgtgaggtca 458

                                                                       
Query: 118 ctagtggccatagctataaaagtaacaagacataccccatctagagaagtatcaatggaa 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ctagtggccatagctataaaagtaacaagacataccccatctagagaagtatcaatggaa 398

                                                                       
Query: 178 gtctagtagggcatggaaatctcactgttacccagaagcaagaaatatctctcctaacct 237
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 397 gtctagtagggcatggaaatctcactgttacccagaagcgagaaatatctctcctaacct 338

                                                                       
Query: 238 cg-atatcaacaaagagcatacacatcatgctgtacctctacccaatcctggtagcatta 296
           || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 cgaatatcaacaaagagcacacacatcatgctgtacctctacccaatcctggtagcatta 278

                                                                       
Query: 297 agtagttcattcatctgccagctgctggactggcaccagactaaagtgaccaaaaatcta 356
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 277 agtagttcattcatctgccagctgctggactggcaccagactaaagtgaccaaaaatcca 218

                                                                       
Query: 357 tagatttattattcagaatctgaaaagattttaaggctatcttcataaaattgcttcagc 416
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 tggatttattattcagaatctgaaaagattttaaggctatcttcataaaattgcttcagc 158

                                                                       
Query: 417 aaacaattatgtataccact-acaagcattttttttaaaaaaaatattaaagttctcatc 475
           |||||||||||||||||||| | |||||||||||||||||||  ||||||||||||||||
Sbjct: 157 aaacaattatgtataccactta-aagcattttttttaaaaaa--tattaaagttctcatc 101

                                                                       
Query: 476 agagtgatgggctaagaaaatccaaatggaaaattttgaactgaaaagtacaataactga 535
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 100 agagtgatgggctaagaaaatccaaatggaaaattttgaactgaaaagtacaataactga 41

                                                   
Query: 536 agtggaaacctcatgtaaaggctcagggcaggaagaagag 575
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 40  agtggaaacctcatgtaaaggctcagggcaggaagaagag 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 733
Length of database: 1134
Length adjustment: 10
Effective length of query: 723
Effective length of database: 1124
Effective search space:   812652
Effective search space used:   812652
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)