BAC Information

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BAC

Clone NameMSMg01-146F11
Chromosome6 (Build37)
Map Location 57,962,404 - 58,032,715
singlet/doubletdoublet
Overlap geneEG633683, LOC626649, LOC626659
Upstream geneEG434016, V1rc32, V1rc30, V1rc1, V1rc3, EG626397, V1rc4, V1rc5, V1rc7, V1rc6, LOC100041445, V1r-ps6, V1rc29, V1rc16, V1rc26, V1rc27, EG434017, LOC666822, Ppm1k, Herc5, Pigy, Lancl2, AW146242, V1rc28, LOC626582, V1rc23, V1rc24, LOC100041514, V1rc18, V1rc8, V1rc17
Downstream geneLOC626672, LOC666893, LOC100041571, V1rc33, LOC626724, V1rc25, V1rc2, LOC666928, V1rc22, LOC626817, EG626828, LOC666954, Abcg2, Herc3, Nap1l5, D430015B01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146F11.T7 (MSMg01no146_f11.b1)MSMg01-146F11.TJ (MSMg01no146_f11.g1)
ACCAG349904AG349905
length1,2181,243
length of high quality
(start - end)		754 (87 - 840)748 (93 - 840)
definitionCHROMAT_FILE: MSMg01no146_f11.b1 PHD_FILE: MSMg01no146_f11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:00 2005CHROMAT_FILE: MSMg01no146_f11.g1 PHD_FILE: MSMg01no146_f11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueplural
Map location.(57,962,404 - 57,963,157)(58,031,968 - 58,032,715)
sequence
NCCCACATTTNNNNNNGCAGTGGGCGCTAACGACTCCTAAGGGAGAGGAT
CCGCGGAATTCTGTAAAATTGAGTTCCCCTTAAGTGACCCTGATCAGAAT
ATTCTAGTCTCACACTACGAGCCAGTTCTCTGTGACCAAGCTGCAGCAGC
AGAAATGTTGCTGCAGAGACTGGGGAAGCAATTATCCCCAGAGTTTCACA
AGTTACATAGCATAAATTTGGGAAAGGTATGAAAATATTCAAGTAACCCA
ATCACAAAAGAACATACATGGTATGTACTCACTGATACGTGGGTATAAGT
CCAAAAGTTTGGAATACCCAAGATACAATTCACAGACCACTTGAAGAAGA
AGGAAGACCAAAGTGTGGGTGCTTCTGTCCTTCTTAGAAGAGGGAATAAA
ATACCCAGGGGAGGAGATACAAAGACAAAGTGTGGAACAGAGAATGAAGG
AAAGGCCATCCAGGAATTGCCCCACCTGGGAATCCATCCCAGATACAGTC
AACAAACCCAGACACTATTGTGGATGCCAAGAAGTACATGCTGACAGGAG
CCTGATATAGCTGTCTTCTGAGCGGGCATTCCAGAACATTACAAATACAG
AGCCAGATGTTTGTTACCAACCATTGGACTGAACATGGGGTCCCCAATAG
AGGAGTTAGAGAAAGGACTGAAGGAGCTGAAGGGCTTTGCAAACTCTATA
AGAAGAACAATATGAAACAAGACCGCCTCAGAGCTCCCAGAGACTAAACT
ATCAACCAAAGTGTACACATGGAGGGACCCATGGCCTCAGCTGCATATAT
AGCAGAGAATGGCCTTGTCAGGAATCAATGGGAGGAGAGGCCCTTGGTCC
TGTGAAGGCTTCATGTCCCAGGGTAGCAGTATTTGAGGGCTGAGAAATAG
GAATGTGTGGTTGTTTGCCTCCCCTCTCCTTTCTTTCTCCCTTTTTCTTT
TTCTTCTCTTTTCTTTTCNCTTTTCTTTTTTTCTTTTCTTCTTTTTTTTT
TTTTTTTCTTCTTTCTTTTTTTCTTTTCTCTTTTTNTCTCTCTTCTTCTC
TTTTTTTCTCTTCTCTTTTTTTTTCTTCTTCTTTTTTTTTTTCCTTCTTT
TTTTTTTCTCTCTTTCTTTTCTTTTCCTTTTCCCTCTCTCCCTTCTTCTT
TTCTCTTTCTTCTTCTTCTCTCTCTTTTTCTTTTTCNTTTCTCTACCTTA
TCTTTTCTCTTTCCATTT

NCCCTGTCATTTNTNTTAACATGTGAGGCXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTCCTGAGTGTGTACTC
TATGAATTCCAATAGCCAATGCTGCTCGTTTTCAATTCCCGCAACAAAAC
ACTGAAATACCTTCTAGAGTGAAATGGAACACACATTTATTGGTGTGCAG
GAATACATTTTATAATGTTAAGCTACTTTTCAATTATATTTTGAATTTTC
TCATTTTACTACTTTGCTCCAGTTAACAGACTATATGCACTTAATACAAT
GAAACTTAAGTTAGGAATATTCAAGAAATATTAGCTAATTTAGGGTTTAT
CTGTAATTTTCTAGTTTGTGATTATTTCATACATTTGAAAGTTCTTAGGA
AAGTTTCAACTCAAGGCCTAGGAATTTTCAATACATTGTTAACATATAAT
AAGGTTTTTTTTTAATTTGAGAGACTTGTTTATTCTATAGCAAAAAATTT
TTAATAAAGGAAATCATTCTGTATATTTCAAAAGGCTCTGGAAGTCTCAT
GTCACTTATTTATAAAATCCATGTAAACTTATTGTTCAAGCAGGTGAACT
GTATAAGTATCAGTAGAAAATTAAGTGTTTCACTGAAAATGAATTCAGTT
TTAATATTTTAAATTTTCTCAATGAAACCTTTTAACATTGCTACTGGTAC
ATTTTTCAATAAACACTTCATTAGTAGTGAGAAAATTATTTATTATTCTC
AAACAGCATAAAAATTTTAAGGTCAAGTCCCCCAATATTTCCGCTAATAA
TTACAAAACATAGTTTCTGTTGTATAATTATGCAGGTCATTATTTCCCTC
ACTAACTTTCCTCAACACACACACACACACACACACACACACACACACAC
ACACACACTCAAAATATTGAACTTTAGAACAGGTAATATAGAATTATGAA
ATTGATAATTTTTAAAAAAATGGAACAAAATACTGCCCAGTAATTTCACT
ATGTGACCCGCCACATTTTATCAATACTAAAAAATCCCAAGTGATAATTT
CTGAATTTATGTTAACAATCCAATAAAAATGTTTCCAAATTTAATATTTG
TAAAATCCACTTAAAGGGTGCTCGCAAAAGAACCCATAAACAAGGGTTCT
TTGTTTTTTTTTCAGTTCTACTCCAACTCAAAGAAAACTTTCTCCCTCTT
TTCCTTAAAAGTCTATTTTTCTTATGTTCCTCTTCTTCAACAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_f11.b1 MSMg01no146_f11.b1 CHROMAT_FILE:
MSMg01no146_f11.b1 PHD_FILE: MSMg01no146_f11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:00 2005
         (754 letters)



>mm_chr6_57962204_57963357
          Length = 1154

 Score = 1388 bits (718), Expect = 0.0
 Identities = 745/754 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   accctgatcagaatattctagtctcacactacgagccagttctctgtgaccaagctgcag 60
           ||||||||||||||||||||||||||||||| |||||| ||||||||||  |||||||||
Sbjct: 201 accctgatcagaatattctagtctcacactatgagccatttctctgtgatgaagctgcag 260

                                                                       
Query: 61  cagcagaaatgttgctgcagagactggggaagcaattatccccagagtttcacaagttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagcagaaatgttgctgcagagactggggaagcaattatccccagagtttcacaagttac 320

                                                                       
Query: 121 atagcataaatttgggaaaggtatgaaaatattcaagtaacccaatcacaaaagaacata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagcataaatttgggaaaggtatgaaaatattcaagtaacccaatcacaaaagaacata 380

                                                                       
Query: 181 catggtatgtactcactgatacgtgggtataagtccaaaagtttggaatacccaagatac 240
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 381 catggtatgtactcactgatacgtgggtattagtccaaaagtttggaatacccaagatac 440

                                                                       
Query: 241 aattcacagaccacttgaagaagaaggaagaccaaagtgtgggtgcttctgtccttctta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aattcacagaccacttgaagaagaaggaagaccaaagtgtgggtgcttctgtccttctta 500

                                                                       
Query: 301 gaagagggaataaaatacccaggggaggagatacaaagacaaagtgtggaacagagaatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaagagggaataaaatacccaggggaggagatacaaagacaaagtgtggaacagagaatg 560

                                                                       
Query: 361 aaggaaaggccatccaggaattgccccacctgggaatccatcccagatacagtcaacaaa 420
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aaggaaagaccatccaggaattgccccacctgggaatccatcccagatacagtcaacaaa 620

                                                                       
Query: 421 cccagacactattgtggatgccaagaagtacatgctgacaggagcctgatatagctgtct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 621 cccagacactattgtggatgccaagaagtacatgctgacaggagcctgatataactgtct 680

                                                                       
Query: 481 tctgagcgggcattccagaacattacaaatacagagccagatgtttgttaccaaccattg 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tctgagcgggcattccagaacattacaaatacagagccagatgtttgttaccaaccattg 740

                                                                       
Query: 541 gactgaacatggggtccccaatagaggagttagagaaaggactgaaggagctgaagggct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gactgaacatggggtccccaatagaggagttagagaaaggactgaaggagctgaagggct 800

                                                                       
Query: 601 ttgcaaactctataagaagaacaatatgaaacaagaccgcctcagagctcccagagacta 660
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 801 ttgcaaactctataagaagaacaatatgaaacaagaacgcctcagagctcccagagacta 860

                                                                       
Query: 661 aactatcaaccaaagtgtacacatggagggacccatggcctcagctgcatatatagcaga 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 aactatcaaccaaagtgtacacatggagggacccatggcctcagctgcatatatagcaga 920

                                             
Query: 721 gaatggccttgtcaggaatcaatgggaggagagg 754
           ||||||||||| ||||||||||||||||||||||
Sbjct: 921 gaatggccttgccaggaatcaatgggaggagagg 954


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 754
Length of database: 1154
Length adjustment: 10
Effective length of query: 744
Effective length of database: 1144
Effective search space:   851136
Effective search space used:   851136
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no146_f11.g1 MSMg01no146_f11.g1 CHROMAT_FILE:
MSMg01no146_f11.g1 PHD_FILE: MSMg01no146_f11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:00 2005
         (748 letters)



>mm_chr6_58031768_58032915
          Length = 1148

 Score = 1384 bits (716), Expect = 0.0
 Identities = 740/748 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtgtactctatgaattccaatagccaatgctgctcgttttcaattcccgcaacaaaacac 60
           ||||||||||||||||||||||||||||| |||| |||||||||||| | ||||||||||
Sbjct: 948 gtgtactctatgaattccaatagccaatggtgcttgttttcaattcctgtaacaaaacac 889

                                                                       
Query: 61  tgaaataccttctagagtgaaatggaacacacatttattggtgtgcaggaatacatttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 tgaaataccttctagagtgaaatggaacacacatttattggtgtgcaggaatacatttta 829

                                                                       
Query: 121 taatgttaagctacttttcaattatattttgaattttctcattttactactttgctccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 taatgttaagctacttttcaattatattttgaattttctcattttactactttgctccag 769

                                                                       
Query: 181 ttaacagactatatgcacttaatacaatgaaacttaagttaggaatattcaagaaatatt 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 ttaacagactgtatgcacttaatacaatgaaacttaagttaggaatattcaagaaatatt 709

                                                                       
Query: 241 agctaatttagggtttatctgtaattttctagtttgtgattatttcatacatttgaaagt 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 708 agctaatttagggtttatctgtaattttctagtttgtgattatttcatacatttgaaaat 649

                                                                       
Query: 301 tcttaggaaagtttcaactcaaggcctaggaattttcaatacattgttaacatataataa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 648 tcttaggaaagtttcaactcaaggcctaggaattttcaatacattgttaacatataataa 589

                                                                       
Query: 361 ggtttttttttaatttgagagacttgtttattctatagcaaaaaatttttaataaaggaa 420
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 588 ggtttttttttaatttgagagacttgtttatcctatagcaaaaaatttttaataaaggaa 529

                                                                       
Query: 421 atcattctgtatatttcaaaaggctctggaagtctcatgtcacttatttataaaatccat 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 atcattctgtatatttcaaaaggctctggaagtctcatgtcacttatttataaaatccat 469

                                                                       
Query: 481 gtaaacttattgttcaagcaggtgaactgtataagtatcagtagaaaattaagtgtttca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 gtaaacttattgttcaagcaggtgaactgtataagtatcagtagaaaattaagtgtttca 409

                                                                       
Query: 541 ctgaaaatgaattcagttttaatattttaaattttctcaatgaaaccttttaacattgct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ctgaaaatgaattcagttttaatattttaaattttctcaatgaaaccttttaacattgct 349

                                                                       
Query: 601 actggtacatttttcaataaacacttcattagtagtgagaaaattatttattattctcaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 actggtacatttttcaataaacacttcattagtagtgagaaaattatttattattctcaa 289

                                                                       
Query: 661 acagcataaaaattttaaggtcaagtcccccaatatttccgctaataattacaaaacata 720
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 288 acagcataaaaattttaaggtcaagtcccccaatatttcctctaataattacaaaacata 229

                                       
Query: 721 gtttctgttgtataattatgcaggtcat 748
           ||||||||||||||||||||||||||||
Sbjct: 228 gtttctgttgtataattatgcaggtcat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 748
Length of database: 1148
Length adjustment: 10
Effective length of query: 738
Effective length of database: 1138
Effective search space:   839844
Effective search space used:   839844
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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