BAC Information

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BAC

Clone NameMSMg01-146G05
Chromosome6 (Build37)
Map Location 14,890,003 - 14,890,710
singlet/doubletsinglet
Overlap geneFoxp2
Upstream geneLOC100041043, LOC100040513, LOC667797, Ppp1r3a
Downstream geneLOC100040568, Mdfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146G05.T7 (MSMg01no146_g05.b1)MSMg01-146G05.TJ (MSMg01no146_g05.g1)
ACCAG349940AG349941
length1,2361,248
length of high quality
(start - end)
706 (127 - 832)751 (89 - 839)
definitionCHROMAT_FILE: MSMg01no146_g05.b1 PHD_FILE: MSMg01no146_g05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:06 2005CHROMAT_FILE: MSMg01no146_g05.g1 PHD_FILE: MSMg01no146_g05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGTTCCTTTTNTTTACATTCGGCGCTATAGACTCCTATAGGGAGAGGA
TCCGCGGAATTCTTATTGTCTTTGCAAACCTTTAAATGTAATATCTGATC
AGGGCATGTTAAAAGAGTGCCCATCCAGTAAATCTGCCCCGTTACATGTA
TCTCCTTTATTCTCCCAACATGTGAGTGTTTATGGCACACAATTATTCTG
TTCTCCCATATAGCATTTGAATTAAAAACAAAATAAAACCATGTTACTGA
TGTTATCCTATAGGTATGTACATGTATAAACATACACTAACACATATATG
CCTGGAATAATCATTAAAGAAAATGGAGAAAATTAAGAGTTCTTCTCTGT
GACGGCACAGTTCCTTATATTTCTCTCATTCTGAAGGATGTGTTTTATTC
TCTGAATCTTTGACAAACTTCTATGTCCAGTGTGGAGGATTAACCTACTC
ATCCATGTATCTTCCACACAGAAGATCACGTGGTATGTAGGACCTTAGGT
CTTTAGCCACCTCCAAAATTATATATCACATAGTCAGAAGTCTTAAAATT
ATAATCAATTAATGTCATTTCTATAGATTAAAGGAAGTTTGTAGTCAGTT
AAAACAGAGACTACATAAATTTTTATGAAATTTACAGAACTACAAATAAC
TTTACATTTATCATATTAAATTTATTCCTGCGAGTTTTCATCTATTCTAA
CCTGTCAAGATCATTCAAAGCTTTATTCTGACTTACTAAAGAAAAAGTCA
AAATTTCTTGGCTAATATATAACCAGTCATTGACTATACCTGTCTATTCT
TAGCTCCATCACAGATTTTTTTCTATCATTTTTTTGAAAAAAAAAAGAGA
TTAATAGCCTCCACTTTTAAAATCATACTTTAACAGGGCAAAATTTATCT
AGAAAAATTATGGATAAGGAAAGTATGACTGGTATAAATTCTCTATTAAT
TCATTTGTAATCAATAAAAGTGTTTCAGGGAAAAATTTGTTTCTTTTGTC
CATTTTGTTCATAAGGGTTTCAAAAAAATCCATTCCCATGGGACCCCCGA
ATTTCAATTGGGGAATTAGGTATAAAAAAATCCTCAAAAAGTAGTTTAAT
GATGAACTCCCTATAACCAAGTGGTTGGTATTTAAACTCTCCCCTCTATT
TGTCTTATAAAGTAAATTTCTTTTTAATTCCGGTTCTTATTTTTTAATTC
TCTATCTCCCCTTTAAATAAAAACATTTCCATCCAT
NCCCTGTTCTTTTTTAAGAGGTGATGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGAGCTTGATCTTGGTCA
AGGATGTTCTAGGACTGCCGTAACACTGGTGGAAGGCCCTAGCCATGTCA
GAATTCAATTTTAAAAAGCACTAATAATAGGAAAATACTGAAAGAGAGCA
TGTGGATCTATACACTAGACTAACGCGGTAATGGAACGCGGGAATGAAAA
ATTAATGTATGGGTAGAGAACGCTAGACTCCAGGAGGAGAGCTTCCTTGA
AACTCTTTTGCCTCATGAGTGACTTTTAAGCCTTTTGGCTCATCCAGTTG
ACTCGACCGAAGAGCATAGCAGACCATCACTGTTGAGTATGTGTTGAATT
AGTACACATTGTTAGTGTGTAGGATTTATAGGTTATTGGAAATTCTACCC
TCATCTCAAGCTAAGGTCCACTTAACATTTTAATGAAACTTCAGTCAGCA
ACTCAAACATTAAATTCTAAAATAAAAATATAAACATAATAAAGTCAGAC
CAACAATAAACTAATTTGTGGTTATCTCTAGTTTCTTCCTGAGAAATGCA
GCAAGAAGATAGTAATTGTCTTTATTTTGCACAGTAGGATAATTGATCTC
CTTCTAGAGCAGAAAACTTACTATATATCACAAATGTGTGAAGTTCCATA
GCATGAAACTGCCTTGATTCTGAGTGAAGTGTTTCAGGTAAGGTTCATCA
ATATCCTGTGTGAATGCAGAGGCACAATGGTATGCAACAAGGAAGGGCTC
TGCCAGACACTCTCCTATGTTTGACTTAGAATTACTTCTTGGTCATAGAA
CTTAAGAAACCTTTTGCTGTTGCCAAATATTTCTCAACTCCCACATTCCA
TTGCAGTGTACCTCTTTTTTGAAGTCCGGAACTAACATTTAAGTCATGTA
AAACACTTCCAAACCAAAAGGCTAAAAGACTTTTCAAATCCTCCTTATTT
TCATGCCAAAAAAGGTTTCCGGATAAACCCAAGGAAGCCGCCTTTGTTTT
GGTGTTTTGTTGGGATATCCTTTCCCTCTTTTTGCTTTCAATGGCTTTAA
ATTTCATTTCCCTATTCCCCCCTTTTTGTCCTCTCCACCCCCTTTTTCTT
TTTTTTATTCCGCTATCCCTGTGATAATGATTTCTTTTAATTAGATCTTT
TCTCCTCTCTAATCTTTCTCTGTCATACAATTATTTTTANTCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_g05.b1 MSMg01no146_g05.b1 CHROMAT_FILE:
MSMg01no146_g05.b1 PHD_FILE: MSMg01no146_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:06 2005
         (706 letters)



>mm_chr6_14889989_14891094
          Length = 1106

 Score = 1280 bits (662), Expect = 0.0
 Identities = 696/708 (98%), Gaps = 2/708 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaaatctgccccgttacatgtatctcctttattctcccaacatgtgagtgtttatggc 60
           ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 agtaaatctgctctgttacatgtatctcctttattctcccaacatgtgagtgtttatggc 663

                                                                       
Query: 61  acacaattattctgttctcccatatagcatttgaattaaaaacaaaataaaaccatgtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 acacaattattctgttctcccatatagcatttgaattaaaaacaaaataaaaccatgtta 603

                                                                       
Query: 121 ctgatgttatcctataggtatgtacatgtataaacatacactaacacatatatgcctgga 180
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 602 ctgatgttatcctataggtatgtacatatataaacatacactaacacatatatgcctgga 543

                                                                       
Query: 181 ataatcattaaagaaaatggagaaaattaagagttcttctctgtgacggcacagttcctt 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 542 ataatcattaaagaaaatggagaaaattaagagttcttctctgtgatggcacagttcctt 483

                                                                       
Query: 241 atatttctctcattctgaaggatgtgttttattctctgaatctttgacaaacttctatgt 300
           ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 482 atatttctcccattctgaaggatgtgttttattctctgaatcttggacaaacttctatgt 423

                                                                       
Query: 301 ccagtgtggaggattaacctactcatccatgtatcttccacacagaagatcacgtggtat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ccagtgtggaggattaacctactcatccatgtatcttccacacagaagatcacgtggtat 363

                                                                       
Query: 361 gtaggaccttaggtctttagccacctccaaaattatatatcacatagtcagaagtcttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gtaggaccttaggtctttagccacctccaaaattatatatcacatagtcagaagtcttaa 303

                                                                       
Query: 421 aattataatcaattaatgtcatttctatagattaaaggaagtttgtagtcagttaaaaca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 aattataatcaattaatgtcatttctatagattaaaggaagtttgtagtcagttaaaaca 243

                                                                       
Query: 481 gagactacataaatttttatgaaatttacagaactacaaataactttacatttatcatat 540
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 242 tagactacataaatttttatgaaatttacaaaactacaaataactttacatttatcatat 183

                                                                       
Query: 541 taaatttattcctgcgagttttcatctattctaacctgtcaagatcattcaaagctttat 600
           ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 182 taaatttattcctacgagttttcatctattctaacctgtcaagttcattcaaagctttat 123

                                                                       
Query: 601 tctgacttactaaagaaaaagtcaaaatttcttggctaatatataaccagtcattgacta 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 tctgacttactaaagaaaaagtcaaaatttcttggctaatatataaccagtcattgacta 63

                                                           
Query: 661 tacctgtctattcttagctccatcacaga--tttttttctatcatttt 706
           |||||||||||||||||||||||||||||  |||||||||||||||||
Sbjct: 62  tacctgtctattcttagctccatcacagatttttttttctatcatttt 15


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 706
Length of database: 1106
Length adjustment: 10
Effective length of query: 696
Effective length of database: 1096
Effective search space:   762816
Effective search space used:   762816
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)