Query= MSMg01no146_j14.b1 MSMg01no146_j14.b1 CHROMAT_FILE:
MSMg01no146_j14.b1 PHD_FILE: MSMg01no146_j14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:33 2005
(687 letters)
>mm_chr6_14542452_14543538
Length = 1087
Score = 1081 bits (559), Expect = 0.0
Identities = 594/611 (97%), Gaps = 9/611 (1%)
Strand = Plus / Minus
Query: 1 atgcacacaagcctccataaaagggaccctgaacaagcaaaggagacaggctaggcattt 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 611 atgcacacaagcctccataaaagggactctgaacaagcaaaggagacaggctaggcattt 552
Query: 61 tatttggagtaatctagatgatatgactaaagagcatcaagagaaaaaaaaatggcacga 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 551 tatttggagtaatctagatgatatgactaaagagcatcaagagaaaaaataatggtacga 492
Query: 121 gaaagataatgatgttagtaaatttgagataggtaaacaactaagccatttgtttccact 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 491 gaaagataatgatgttagtaaatttgagataggtaaacaactaagccatttgtttctact 432
Query: 181 gttgtgtcaaaattactagaaagataagtatagaagtatcatgcaagaggaaaaatagca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 gttgtgtcaaaattactagaaagataagtatagaagtatcatgcaagaggaaaaatagca 372
Query: 241 agtagatttttagcaagatgaaccctgtgttattattctatcacctgtagttgctatgac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 agtagatttttagcaagatgaaccctgtgttattattctatcacctgtagttgctatgac 312
Query: 301 cattggttttagactgtgatgtgtatagatagatgttattgatcattgtgatagaaaggg 360
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cactggtcttagactgtgatgtgtatagatagatgttattgatcattgtgatagaaaggg 252
Query: 361 tgaactctgccagaaagactgtgctattaaat---------tgatgatgatgatgatgat 411
|||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 251 tgaactctgccagaaagactatgctattaaattgatgatgatgatgatgatgatgatgat 192
Query: 412 aaaaatacagcaagtgagaaagcctaactctgcaggagacttgattgaagcatgcaaaga 471
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 191 aaaaatacagcaagtgagaaagactaactctgcaggagacttgattgaagcatgcaaaga 132
Query: 472 acagtgagagctggcagagagtaacgctggatttgcttgtgctgggtgacagagtcatga 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 acagtgagagctggcagagagtaacgctggatttgcttgtgctgggtgacagagtcatga 72
Query: 532 gctccaaagtcattaagagcctgcaataaatgatagatgagtccctaagagtgaagtgaa 591
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 gctccaaagtcattaagagcctgcaataaatgatagatgagtccctaagagtgaagtgaa 12
Query: 592 cagaaaagagc 602
|||||||||||
Sbjct: 11 cagaaaagagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 687
Length of database: 1087
Length adjustment: 10
Effective length of query: 677
Effective length of database: 1077
Effective search space: 729129
Effective search space used: 729129
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no146_j14.g1 MSMg01no146_j14.g1 CHROMAT_FILE:
MSMg01no146_j14.g1 PHD_FILE: MSMg01no146_j14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:33 2005
(657 letters)
>mm_chr6_14438807_14439863
Length = 1057
Score = 1195 bits (618), Expect = 0.0
Identities = 648/658 (98%), Gaps = 2/658 (0%)
Strand = Plus / Plus
Query: 1 gactttctgactggagtttatgttttacttacagtacctgtaggttgccctgtgtattca 60
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct: 201 gactttctgactggagtttatgttttacttacagtacctgtaggttgccttgtgtatcca 260
Query: 61 gtgactgtccacctccagtttattttgtctgggagacttgaatttgaaattttgaattta 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgactgtccacctccattttattttgtctgggagacttgaatttgaaattttgaattta 320
Query: 121 gaattgcttcatgtctttcttaaaatctctagtctgtaaatacatttcattctcttgcag 180
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaattgcttcttgtctttcttaaaatctctagtctgtaaatacatttcattctcttgcag 380
Query: 181 ttatagtggctatccacatctctttatttttgtcattaaacttttagtgcaaatatagtc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttatagtggctatccacatctctttatttttgtcattaaacttttagtgcaaatatagtc 440
Query: 241 ctaattttcaa-accactgggttggtctctgaaaatctgcagtgtgttttgcctgcattc 299
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaattttcaagac-actgggttggtctctgaaaatctgcagtgtgttttgcctgcattc 499
Query: 300 tattttacataagaaaagagcctgatatataatattcatatcttgtaatttgatctaatg 359
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||
Sbjct: 500 tattttacataagaaaagagtctgatatataatattcatatcttgtaattttatctaatg 559
Query: 360 ttttagtagtagatgtagcattaatccttaggagaatataatcctttatctttagaaagc 419
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttttagtagaagatgtagcattaatccttaggagaatataatcctttatctttagaaagc 619
Query: 420 acacatgctgtgcaaagcaaaagaatattttaataagttttatttttgtagtggaatagt 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 acacatgctgtgcaaagcaaaagaatattttaataagttttatttttgtagtggaatagt 679
Query: 480 aaaacaaaatgagacagtaaagaaaggactatttgtcacaataatatagccactgtcttt 539
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 680 aaaacaaaatgagacagtaaagaaagaactatttgtcacaataatatagccactgtcttt 739
Query: 540 ttaactttcagcagatgatttatttttaatacattgctatttaaaatataatagcattac 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttaactttcagcagatgatttatttttaatacattgctatttaaaatataatagcattac 799
Query: 600 ttcccctttctttcctcctctgcctcctgtatctctttcctccataacccctcccatg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 ttcccctttctttcctcctctgcctcctgtatctctttcctccataacccctcccatg 857
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1057
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1047
Effective search space: 677409
Effective search space used: 677409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
