BAC Information

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BAC

Clone NameMSMg01-146K04
Chromosome6 (Build37)
Map Location 20,073,574 - 20,074,346
singlet/doubletsinglet
Overlap genenone
Upstream geneEif3s6-ps4
Downstream geneLOC100040838
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-146K04.T7 (MSMg01no146_k04.b1)MSMg01-146K04.TJ (MSMg01no146_k04.g1)
ACCAG350119AG350120
length1,1891,212
length of high quality
(start - end)		770 (93 - 862)774 (92 - 865)
definitionCHROMAT_FILE: MSMg01no146_k04.b1 PHD_FILE: MSMg01no146_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:38 2005CHROMAT_FILE: MSMg01no146_k04.g1 PHD_FILE: MSMg01no146_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:08:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCACTCTTTNGNGNAACAATGGGCGCTAXXXXXXXXXXXXXXXXXXXX
XXXCGCGGAATTCAGTGATATCCAAAATTCCGGTATACATGAAAGAGGTC
CAAAGTGGAAAATTCATAATACTAAGTGCCCTAATTAACCCCTGGAAAGA
TCTAATAAGAGCAATTGAAAAGCACACTTAAAAGCTCTAGAACAAAAAGA
ATCAAATGCACCTAAGAGAAGCTACAGTCTAACTGAAGTCTGAAAGTTCT
AGAACTAAAAGTAGAAAATACACCCAAGAGGAGGTAAAATCAAGCTCCTT
GATGAAATAACCAATTAGAAACAAAGAAAACAATACACAAAATTTAGAAA
GATAAAAACAGTTTCCTTGAGAAAAATCAAGAATATAGATAAACCCTTAG
CCAAACTAACTAATAGGCAGAGATACAGTATCCAAATTCACAAAATCAAA
AATGAAAATCAAGATATAACAACAGACAATGAGGAAATTCAAGGAATCTT
TAGGTCTTCCTTGAAAGTGTGTACTCACTGGGGCACTTCAGCTTTTTGAG
CCTTTTGAATTCTGTGGACTGTATCTTGTGTATTCTCTATGGGTCTTTTT
CTCTTTCTGTCTTTTTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTT
CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGGCCAA
TATTTACTTATTAGTGAGTGCATACCATGCATGTCATTTTGGGTCTGAGG
AATGTCACTCAGTATACTTTCTACTTCCATCCATTTGCCTGCCAAAGTCA
CAATGTCCTCGTTCTTAATTGCTGAGTAGTATTACTTTGAGTAAATGAAC
CACATTTTCCATACTTTGGAGAGAGAAAAAAGCAATCCCAAGTGTAAAGA
GAAGGAGGGAAGGACTTGCTAAGGAATGTGTGCTTCCTTAATTCTTTTAA
TTTTTTCTTCTTTTTCATCTTCTCCTTATTTTTCTTTCTTCTCATTTTTT
TTATCCTTTCTTTTTCATCTATCTTCTTCTCTTTTCTTTTTCCATTCCTT
TTCTCTTTTCTTTTCTCTCTTTTCTCCTTCTCTTATTTTCTCTTTTCTTC
TCTTCTTTCTCTTAATATTTTCTTTTTTCTTTTATCCTT

NCCCATTCTTATTTTTAAGAAGTGAGCTGGXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTAAAGGCCTTAGCACATA
TAAACAGTATATAGGCTGAGCCTTAAAATTCTTAAAATGCACTACTAAAG
GAAACGAAGCCAAGAGGTGAGCTTCATTAAGCCACCAAGGAGTCATAAAT
CTTGTCTTTCCATGCTTCTGATAGACATTTGGAGAGCATTGTTTATGTTA
TTCCTGATGTGACCCATCTTTTTTTCCTCCTTTTTTCTATTTTGTTTGTT
TGTTTTTTTCTCTATTGTTTTGTCTACTTAAAATAATTGTACTACCTATT
CCCATGACCTTAGAACTTATGCTAGCAACTATCCTCAAAAGTGGTTATCT
TTTATAGGATTGTTTTCCCCTTTTACTTAAATTCCATCATCTGTTCCCTG
AAAGTGCAGCATCACACCGCTGACCTTAAATGAAGACTACTTTGGAAATG
AAAAAAATGTATAAAAAATTACTGCTAGCAGTTTAATAAATCATTCCTGA
TGTATGCTGAGTGAATATTTCTAAAATCAATGAAAATGAAATTAGTTTAG
AGTTGAGGGCAAATTATAATTCCATTTTAATCTGGTCACCTATAAGGAAG
ACAGAGTTTAGCAATCTTAATAGTGATTTAGGTTCTGTAACTCACAGATC
ATTCAGTTCTTTGGCTAAACTGTCATTTATCTTGTAGTGACTAATGATTA
AAAACAGGTCTCAAGGATAGTTCCACTTAACATTAGCAGTGAAACATTAC
TGCTCTATATGTCCAGTAAGCTTGTTCTGAGAGTACTATGTTTCTAATTA
ATATGGAGGTAGAACAGGAAGTCGAGGCACACTAAATATATTTAAATCAT
CTTTGAACCCATGAAAATGAAAAAAAAAGAACTAAAAAAGAATCTCCAGT
GGATCAGGGATATCCTGAACTTTGGAATTAATTTTTATGCTGAAAGGGTG
GATGTTTGTCCCCCTCCCTAAATTTGAACCTTTCCTTCCTTTGCTCTTGG
TTAACGAAATGTTGCCATTGTTCAATCTTCAAATCTTCCCTCTATTTTTA
CTTTTATTTGGGATACTATACAATCTAAATTATATTCTCACTATGTATTT
ATATTTTTAATTCTCAAGTGGGTTTCATTTTCCTCATAAATATAAGATAT
TCTATCTTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no146_k04.g1 MSMg01no146_k04.g1 CHROMAT_FILE:
MSMg01no146_k04.g1 PHD_FILE: MSMg01no146_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:38 2005
         (774 letters)



>mm_chr6_20073374_20074547
          Length = 1174

 Score = 1404 bits (726), Expect = 0.0
 Identities = 762/774 (98%), Gaps = 1/774 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tagcacatataaacagtatataggctgagccttaaaattcttaaaatgcactactaaagg 60
           |||||| |||||||||||||||||||||| | |||||||||||||||| |||||||||||
Sbjct: 201 tagcacgtataaacagtatataggctgagacataaaattcttaaaatgtactactaaagg 260

                                                                       
Query: 61  aaacgaagccaagaggtgagcttcattaagccaccaaggagtcataaatcttgtctttcc 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 aaacgaagccaagaggtgagcttcattaaaccaccaaggagtcataaatcttgtctttcc 320

                                                                       
Query: 121 atgcttctgatagacatttggagagcattgtttatgttattcctgatgtgacccatcttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 atgcttctgatagacatttggagagcattgtttatgttattcctgatgtgaccaatcttt 380

                                                                       
Query: 181 ttttcctccttttttctattttgtttgtttgtttttttctctattgttttgtctacttaa 240
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttcctcctcttttctattttgtttgtttgtttttttctctattgttttgtctacttaa 440

                                                                       
Query: 241 aataattgtactacctattcccatgaccttagaacttatgctagcaactatcctcaaaag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aataattgtactacctattcccatgaccttagaacttatgctagcaactatcctcaaaag 500

                                                                       
Query: 301 tggttatcttttataggattgttttccccttttacttaaattccatcatctgttccctga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tggttatcttttataggattgttttccccttttacttaaattccatcatctgttccctga 560

                                                                       
Query: 361 aagtgcagcatcacaccgctgaccttaaatgaagactactttggaaatgaaaaaaatgta 420
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aagtgcagcatcacaccactgaccttaaatgaagactactttggaaatgaaaaaaatgta 620

                                                                       
Query: 421 taaaaaattactgctagcagtttaataaatcattcctgatgtatgctgagtgaatatttc 480
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 taaaaa-ttactgctagcagtttaataaatcattcctgatgtatgctgagtgaatatttc 679

                                                                       
Query: 481 taaaatcaatgaaaatgaaattagtttagagttgagggcaaattataattccattttaat 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 taaaatcaatgaaaatgaaattagtttagagttgagggcaaattataattccattttaat 739

                                                                       
Query: 541 ctggtcacctataaggaagacagagtttagcaatcttaatagtgatttaggttctgtaac 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ctggtcacctataaggaagacagagtttagcaatcttaatagtgatttaggttctgtaac 799

                                                                       
Query: 601 tcacagatcattcagttctttggctaaactgtcatttatcttgtagtgactaatgattaa 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 800 tcacagatcattcagttctttggctaaactgtcatttatcttgtagtgactaatgtttaa 859

                                                                       
Query: 661 aaacaggtctcaaggatagttccacttaacattagcagtgaaacattactgctctatatg 720
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 860 aaacaggtctcaaggatagttccacttaacattagcagtgaaacattactggtctatatg 919

                                                                 
Query: 721 tccagtaagcttgttctgagagtactatgtttctaattaatatggaggtagaac 774
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 920 tccagtaagcttgttctgagagtactatgtttctaattaatatggagggagaac 973


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 774
Length of database: 1174
Length adjustment: 10
Effective length of query: 764
Effective length of database: 1164
Effective search space:   889296
Effective search space used:   889296
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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