Query= MSMg01no146_l09.b1 MSMg01no146_l09.b1 CHROMAT_FILE:
MSMg01no146_l09.b1 PHD_FILE: MSMg01no146_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:48 2005
(264 letters)
>mm_chr6_54367397_54368060
Length = 664
Score = 466 bits (241), Expect = e-136
Identities = 256/261 (98%), Gaps = 1/261 (0%)
Strand = Plus / Minus
Query: 1 cgcctcactgcagctgcttgttacctcatctaagaaaggatcctcacttttctgtctgca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 cgcctcactgcagctgcttgttacctcatctaagaaaggatcctcacttttctgtctgca 344
Query: 61 gaagggcatgcgaggcgatgtttctttatggccaggtactgttatagagctgaagtggga 120
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 343 gaagggcatgcgaggcgatgtttctttatggccaggtactgttacagagctgaagtggga 284
Query: 121 aagaggctgtcctagagttgaaagcttattagattcaataaactgaggaggtgaaaatct 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 283 aagaggctgtcctagagttgaaagcttattagatttaataaactgaggaggtgaaaatct 224
Query: 181 tactagctcatttttttaaaaaa-gctgggctggtgagatggctcagtgggtaagagcac 239
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 223 tactagctcattttttaaaaaaaagctgggctggtgagatggctcagtgggtaagagcac 164
Query: 240 ccaactgctcttccgaaggtc 260
|| ||||||||||||||||||
Sbjct: 163 ccgactgctcttccgaaggtc 143
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 664
Length adjustment: 9
Effective length of query: 255
Effective length of database: 655
Effective search space: 167025
Effective search space used: 167025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no146_l09.g1 MSMg01no146_l09.g1 CHROMAT_FILE:
MSMg01no146_l09.g1 PHD_FILE: MSMg01no146_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:08:48 2005
(536 letters)
>mm_chr6_54223832_54224767
Length = 936
Score = 973 bits (503), Expect = 0.0
Identities = 528/539 (97%), Gaps = 6/539 (1%)
Strand = Plus / Plus
Query: 1 tgagaccactgattgtgggaatgcaatt---ccttatcagggaaaggcccccatttctgc 57
|||||||||||||||||||||||||||| | |||||||||||| ||||||||||
Sbjct: 201 tgagaccactgattgtgggaatgcaattgaac---atcagggaaagggaaccatttctgc 257
Query: 58 tcctgccgctgaggagggggtcagcccttcctagggatatgtatgcaactattcgtttcc 117
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tcctgccgctgaggagggggtcagcccttcctagggatatgtatgcaactattcgtttcc 317
Query: 118 attccatagtccagtctgtctctctgcctctgggtgtagggagcacgaagcttgggcctt 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 attccatagtccagtctgtctctctgcctctgggtgtagggagcacgaagcttgggcctt 377
Query: 178 tacttgctatccttaaaggaaggaatggaagccttcagtcctatgcatttagccatgagc 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tacttgctatccttaaaggaaggaatggaagccttcagtcctatgcatttagccatgagc 437
Query: 238 tggagaggatcttggggtatctcccatcttaatctttctcccattactgaatggccaaag 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 tggagaggatcttggggtatctcccatcttaatctttctcccattactgaatggccaaag 497
Query: 298 gtctgatttggagtgtgatttgtccgtatttatttcctccttatgattttctatcttaac 357
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 gtctgatttggagtgtgaaatgtccgtatttatttcctccttatgattttctatcttaac 557
Query: 358 ctctgtgaccctctcattccttaagacggtgtttttctgacttttggggcatcctgtgga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctctgtgaccctctcattccttaagacggtgtttttctgacttttggggcatcctgtgga 617
Query: 418 cgcactcccaggcatgacaggatgggtcttgctggatttgcaaatccctttccttcctct 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 cgcactcccaggcatgacaggatgggtcttgctggatttgcaaatccctttccttcctct 677
Query: 478 ccaaaattccagtgactttgctctgaagatgcagtttgagtaccttagcatgaaatagc 536
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 ccaaaattccagtgactttgctctgaagatgcagtttgagtaccttagcatgaaatagc 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
